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This page was generated on 2024-05-09 11:40:59 -0400 (Thu, 09 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4748
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4484
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4514
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1028/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ImmuneSpaceR 1.32.0  (landing page)
ImmuneSpace Package Maintainer
Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024)
git_url: https://git.bioconductor.org/packages/ImmuneSpaceR
git_branch: RELEASE_3_19
git_last_commit: 9d9375e
git_last_commit_date: 2024-04-30 10:51:00 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for ImmuneSpaceR on kunpeng2


To the developers/maintainers of the ImmuneSpaceR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ImmuneSpaceR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: ImmuneSpaceR
Version: 1.32.0
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data ImmuneSpaceR
StartedAt: 2024-05-09 01:03:58 -0000 (Thu, 09 May 2024)
EndedAt: 2024-05-09 01:04:35 -0000 (Thu, 09 May 2024)
EllapsedTime: 37.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data ImmuneSpaceR
###
##############################################################################
##############################################################################


* checking for file ‘ImmuneSpaceR/DESCRIPTION’ ... OK
* preparing ‘ImmuneSpaceR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Intro_to_ImmuneSpaceR.Rmd’ using rmarkdown

Quitting from lines  at lines 68-71 [CreateConnection] (Intro_to_ImmuneSpaceR.Rmd)
Error: processing vignette 'Intro_to_ImmuneSpaceR.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘Intro_to_ImmuneSpaceR.Rmd’

--- re-building ‘getDataset.Rmd’ using rmarkdown

Quitting from lines  at lines 37-40 [CreateConection] (getDataset.Rmd)
Error: processing vignette 'getDataset.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘getDataset.Rmd’

--- re-building ‘getGEMatrix.Rmd’ using rmarkdown

Quitting from lines  at lines 38-41 [CreateConection] (getGEMatrix.Rmd)
Error: processing vignette 'getGEMatrix.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘getGEMatrix.Rmd’

--- re-building ‘interactiveNetrc.Rmd’ using rmarkdown
--- finished re-building ‘interactiveNetrc.Rmd’

--- re-building ‘report_SDY144.Rmd’ using rmarkdown

Quitting from lines  at lines 40-45 [unnamed-chunk-1] (report_SDY144.Rmd)
Error: processing vignette 'report_SDY144.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY144.Rmd’

--- re-building ‘report_SDY180.Rmd’ using rmarkdown

Quitting from lines  at lines 57-59 [connection] (report_SDY180.Rmd)
Error: processing vignette 'report_SDY180.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY180.Rmd’

--- re-building ‘report_SDY269.Rmd’ using rmarkdown

Quitting from lines  at lines 53-57 [connection] (report_SDY269.Rmd)
Error: processing vignette 'report_SDY269.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY269.Rmd’

SUMMARY: processing the following files failed:
  ‘Intro_to_ImmuneSpaceR.Rmd’ ‘getDataset.Rmd’ ‘getGEMatrix.Rmd’
  ‘report_SDY144.Rmd’ ‘report_SDY180.Rmd’ ‘report_SDY269.Rmd’

Error: Vignette re-building failed.
Execution halted