Marzia A Cremona
| Snapshot Date: 2024-05-15 14:00:14 -0400 (Wed, 15 May 2024) |
| git_url: https://git.bioconductor.org/packages/IWTomics |
| git_branch: RELEASE_3_19 |
| git_last_commit: c20a937 |
| git_last_commit_date: 2024-04-30 10:55:14 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-16 11:37:09 -0400 (Thu, 16 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4485 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4515 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1085/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IWTomics 1.28.0 (landing page) Marzia A Cremona
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the IWTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IWTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: IWTomics |
| Version: 1.28.0 |
| Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:IWTomics.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings IWTomics_1.28.0.tar.gz |
| StartedAt: 2024-05-16 03:18:46 -0400 (Thu, 16 May 2024) |
| EndedAt: 2024-05-16 03:22:32 -0400 (Thu, 16 May 2024) |
| EllapsedTime: 226.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: IWTomics.Rcheck |
| Warnings: 1 |
##############################################################################
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###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:IWTomics.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings IWTomics_1.28.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/IWTomics.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'IWTomics/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IWTomics' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IWTomics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in 'NEWS':
Cannot process chunk/lines:
0.99.0 First submission
Cannot process chunk/lines:
0.99.11 Revised package
Cannot process chunk/lines:
0.99.12 Fixed bug in plotTest and plotSummary
Cannot process chunk/lines:
1.1.1 Fixed bug in IWTomicsTest statistics=variance
Cannot process chunk/lines:
1.1.2 Fixed alpha
Cannot process chunk/lines:
1.1.3 Fixed bug in IWTomicsData constructor
Cannot process chunk/lines:
1.3.3 Citation added
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (-1) IWTomicsData-class.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:75-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:87-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:93-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:95-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:97-101: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:103-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IWTomicsData-class.Rd:108-109: Lost braces in \itemize; meant \describe ?
checkRd: (5) IWTomicsData-class.Rd:122-126: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:127-170: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:177-179: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:180-182: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:183-186: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:187-189: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:190-193: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:194-196: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:197-200: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:201-204: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:205-208: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:209-211: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:212-214: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:215-217: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:218-220: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:221-223: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:224-226: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:227-229: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:230-234: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:235-237: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:238-248: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:256-261: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:269-274: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:275-280: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:281-286: \item in \describe must have non-empty label
checkRd: (5) IWTomicsData-class.Rd:292-299: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
IWTomicsTest 57.53 2.10 59.64
IWTomicsData-class 11.89 0.18 12.07
IWTomics-package 10.51 1.43 11.97
plotSummary 5.98 1.25 7.24
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'F:/biocbuild/bbs-3.19-bioc/meat/IWTomics.Rcheck/00check.log'
for details.
IWTomics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL IWTomics ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'IWTomics' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'smooth' in package 'IWTomics' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IWTomics)
IWTomics.Rcheck/IWTomics-Ex.timings
| name | user | system | elapsed | |
| ETn_example | 0.23 | 0.02 | 0.25 | |
| IWTomics-package | 10.51 | 1.43 | 11.97 | |
| IWTomicsData-class | 11.89 | 0.18 | 12.07 | |
| IWTomicsTest | 57.53 | 2.10 | 59.64 | |
| features_example | 0.02 | 0.00 | 0.01 | |
| plot-IWTomicsData | 0.56 | 0.05 | 0.61 | |
| plotSummary | 5.98 | 1.25 | 7.24 | |
| plotTest | 4.05 | 0.60 | 4.64 | |
| regionsFeatures_center | 0.00 | 0.01 | 0.01 | |
| regionsFeatures_scale | 0.02 | 0.00 | 0.02 | |
| regions_example | 0 | 0 | 0 | |
| smooth-IWTomicsData | 1.38 | 0.14 | 1.52 | |