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This page was generated on 2024-05-06 11:38:05 -0400 (Mon, 06 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4754
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4489
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4520
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 807/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneMeta 1.76.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2024-05-05 14:00:16 -0400 (Sun, 05 May 2024)
git_url: https://git.bioconductor.org/packages/GeneMeta
git_branch: RELEASE_3_19
git_last_commit: 2eed838
git_last_commit_date: 2024-04-30 10:14:12 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for GeneMeta on palomino3


To the developers/maintainers of the GeneMeta package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneMeta.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GeneMeta
Version: 1.76.0
Command: chmod a+r GeneMeta -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GeneMeta
StartedAt: 2024-05-05 19:07:12 -0400 (Sun, 05 May 2024)
EndedAt: 2024-05-05 19:07:59 -0400 (Sun, 05 May 2024)
EllapsedTime: 47.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r GeneMeta -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GeneMeta
###
##############################################################################
##############################################################################


* checking for file 'GeneMeta/DESCRIPTION' ... OK
* preparing 'GeneMeta':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'GeneMeta.Rnw' using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: genefilter
Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "GeneMeta.tex" ' had status 1033
Error: processing vignette 'GeneMeta.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'GeneMeta.pdf' for vignette with name 'GeneMeta' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.19-bioc\tmpdir\RtmpO2bsIA\Rbuild9106456ba7\GeneMeta\vignettes': 'GeneMeta-FDRtwo.pdf' (150665 bytes), 'GeneMeta-IDRplot.pdf' (5342 bytes), 'GeneMeta-Qplo.pdf' (4674 bytes), 'GeneMeta-compMU.pdf' (47699 bytes), 'GeneMeta-grapics.pdf' (15727 bytes), 'GeneMeta-originalvsCombination.pdf' (53168 bytes), 'GeneMeta-qnormPlotFEM.pdf' (53779 bytes), 'GeneMeta-theFDRplots.pdf' (5299 bytes), 'GeneMeta-theTau.pdf' (4669 bytes), 'GeneMeta.Rnw' (15901 bytes), 'GeneMeta.tex' (18838 bytes)
--- failed re-building 'GeneMeta.Rnw'

SUMMARY: processing the following file failed:
  'GeneMeta.Rnw'

Error: Vignette re-building failed.
Execution halted