Multiple platform build/check report for BioC 3.19 - INSTALL results for EBSeqHMM on kunpeng2

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This page was generated on 2024-05-07 11:40:30 -0400 (Tue, 07 May 2024).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4485
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4258
lconway	macOS 12.7.1 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4470
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"	4480
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

~~EBSeqHMM 1.38.0~~ (landing page)
Ning Leng

Snapshot Date: 2024-05-06 14:00:20 -0400 (Mon, 06 May 2024)

git_url: https://git.bioconductor.org/packages/EBSeqHMM

git_branch: RELEASE_3_19

git_last_commit: e92f274

git_last_commit_date: 2024-04-30 10:40:29 -0400 (Tue, 30 Apr 2024)

nebbiolo1

Linux (Ubuntu 22.04.3 LTS) / x86_64

ERROR

skipped

palomino3

Windows Server 2022 Datacenter / x64

ERROR

skipped

lconway

macOS 12.7.1 Monterey / x86_64

ERROR

skipped

kunpeng2

Linux (openEuler 22.03 LTS-SP1) / aarch64

ERROR

skipped

kjohnson3

macOS 13.6.5 Ventura / arm64

see weekly results here

INSTALL results for EBSeqHMM on kunpeng2

To the developers/maintainers of the EBSeqHMM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBSeqHMM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: EBSeqHMM

Version: 1.38.0

Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL EBSeqHMM

StartedAt: 2024-05-06 20:45:02 -0000 (Mon, 06 May 2024)

EndedAt: 2024-05-06 20:45:03 -0000 (Mon, 06 May 2024)

EllapsedTime: 1.1 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL EBSeqHMM
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘EBSeqHMM’ ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in '/home/biocbuild/bbs-3.19-bioc/meat/EBSeqHMM/R' missing from 'Collate' field:
  zzz.R
ERROR: unable to collate and parse R files for package ‘EBSeqHMM’
* removing ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/EBSeqHMM’