| Back to Multiple platform build/check report for BioC 3.19: simplified long | |
This page was generated on 2024-05-22 11:35:27 -0400 (Wed, 22 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup"
| 4751 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
| 4485 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup"
| 3444 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
| BiRewire 3.36.0 (landing page)
Andrea Gobbi
| Snapshot Date: 2024-05-21 14:00:15 -0400 (Tue, 21 May 2024) |
| git_url: https://git.bioconductor.org/packages/BiRewire |
| git_branch: RELEASE_3_19 |
| git_last_commit: a8b3eb6 |
| git_last_commit_date: 2024-04-30 10:33:26 -0400 (Tue, 30 Apr 2024) |
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |  | |
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | |
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | |
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | |
INSTALL results for BiRewire on palomino3
To the developers/maintainers of the BiRewire package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
|
raw results
Summary
Command output
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###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL BiRewire
###
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* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'BiRewire' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'analysis':
BiRewire.c:149:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
149 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'analysis_ex':
BiRewire.c:221:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
221 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:229:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
229 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_bipartite':
BiRewire.c:280:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
280 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_bipartite_ex':
BiRewire.c:332:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
332 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:339:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
339 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_sparse_bipartite':
BiRewire.c:402:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
402 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_sparse_bipartite_ex':
BiRewire.c:454:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
454 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:461:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
461 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'analysis_undirected':
BiRewire.c:588:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
588 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'analysis_undirected_ex':
BiRewire.c:652:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
652 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:737:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
737 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire':
BiRewire.c:844:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
844 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_ex':
BiRewire.c:893:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
893 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:962:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
962 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1066 | if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
| ~^~~
BiRewire.c:1096:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
1096 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1144:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
1144 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:1149:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1149 | if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
| ~^~~
BiRewire.c:1183:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
1183 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interface.c -o interface.o
interface.c: In function 'R_rewire_bipartite':
interface.c:105:25: warning: too many arguments for format [-Wformat-extra-args]
105 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire_sparse_bipartite':
interface.c:147:25: warning: too many arguments for format [-Wformat-extra-args]
147 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire':
interface.c:252:25: warning: too many arguments for format [-Wformat-extra-args]
252 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire_sparse':
interface.c:296:25: warning: too many arguments for format [-Wformat-extra-args]
296 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-BiRewire/00new/BiRewire/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)