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This page was generated on 2024-02-28 11:37:34 -0500 (Wed, 28 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 242/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.70.2  (landing page)
Hervé Pagès
Snapshot Date: 2024-02-27 14:05:07 -0500 (Tue, 27 Feb 2024)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: RELEASE_3_18
git_last_commit: 77b80d5
git_last_commit_date: 2024-02-07 18:38:59 -0500 (Wed, 07 Feb 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD BIN results for BSgenome on lconway


To the developers/maintainers of the BSgenome package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BSgenome
Version: 1.70.2
Command: rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BSgenome_1.70.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BSgenome.buildbin-libdir
StartedAt: 2024-02-28 00:46:35 -0500 (Wed, 28 Feb 2024)
EndedAt: 2024-02-28 00:47:39 -0500 (Wed, 28 Feb 2024)
EllapsedTime: 64.0 seconds
RetCode: 0
Status:   OK  
PackageFile: BSgenome_1.70.2.tgz
PackageFileSize: 7.383 MiB

Command output

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###
### Running command:
###
###   rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BSgenome_1.70.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BSgenome.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BSgenome.buildbin-libdir BSgenome_1.70.2.tar.gz'
>>>>>>> 

* installing *source* package ‘BSgenome’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BSgenome)