Workflows build report for BioC 3.19 - BUILD results for maEndToEnd on palomino3

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This page was generated on 2024-03-26 14:00:10 -0400 (Tue, 26 Mar 2024).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"	4696
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences"	4434
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"	4459
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

maEndToEnd 2.23.1 (landing page)
Stefanie Reisenauer

Snapshot Date: 2024-03-26 07:45:01 -0400 (Tue, 26 Mar 2024)

git_url: https://git.bioconductor.org/packages/maEndToEnd

git_branch: devel

git_last_commit: 87b4804

git_last_commit_date: 2024-01-12 10:17:07 -0400 (Fri, 12 Jan 2024)

nebbiolo1

Linux (Ubuntu 22.04.3 LTS) / x86_64

palomino3

Windows Server 2022 Datacenter / x64

ERROR

lconway

macOS 12.7.1 Monterey / x86_64

BUILD results for maEndToEnd on palomino3

To the developers/maintainers of the maEndToEnd package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: maEndToEnd

Version: 2.23.1

Command: chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd

StartedAt: 2024-03-26 11:08:39 -0400 (Tue, 26 Mar 2024)

EndedAt: 2024-03-26 12:09:24 -0400 (Tue, 26 Mar 2024)

EllapsedTime: 3645.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd
###
##############################################################################
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* checking for file 'maEndToEnd/DESCRIPTION' ... OK
* preparing 'maEndToEnd':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MA-Workflow.Rmd' using rmarkdown
trying URL 'https://www.ebi.ac.uk/biostudies/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt'
Content type 'text/plain; charset=UTF-8' length 22516 bytes (21 KB)
==================================================
downloaded 21 KB