Renan Sauteraud
| Snapshot Date: 2024-05-07 07:30:02 -0400 (Tue, 07 May 2024) |
| git_url: https://git.bioconductor.org/packages/pepDat |
| git_branch: devel |
| git_last_commit: a63fadc |
| git_last_commit_date: 2024-04-30 10:42:04 -0400 (Tue, 30 Apr 2024) |
| Back to Build/check report for BioC 3.20 experimental data |
|
This page was generated on 2024-05-07 14:51:49 -0400 (Tue, 07 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4662 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 287/425 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| pepDat 1.25.0 (landing page) Renan Sauteraud
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | |||||||
|
To the developers/maintainers of the pepDat package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: pepDat |
| Version: 1.25.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:pepDat.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings pepDat_1.25.0.tar.gz |
| StartedAt: 2024-05-07 11:52:56 -0400 (Tue, 07 May 2024) |
| EndedAt: 2024-05-07 11:53:59 -0400 (Tue, 07 May 2024) |
| EllapsedTime: 63.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: pepDat.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:pepDat.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings pepDat_1.25.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/pepDat.Rcheck’
* using R version 4.4.0 RC (2024-04-16 r86468)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘pepDat/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pepDat’ version ‘1.25.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pepDat’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 9.7Mb
sub-directories of 1Mb or more:
extdata 9.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) pep_hxb2.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_hxb2.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_hxb2.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_hxb2.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_hxb2.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_hxb2.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_hxb2.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_mac239.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_mac239.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_mac239.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_mac239.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_mac239.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_mac239.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pep_mac239.Rd:22: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.20-data-experiment/meat/pepDat.Rcheck/00check.log’
for details.
pepDat.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL pepDat ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘pepDat’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pepDat)