Stefano de Pretis
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/INSPEcT |
| Branch: RELEASE_3_9 |
| Last Commit: 0658703 |
| Last Changed Date: 2019-05-02 11:53:56 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:33:34 -0400 (Wed, 16 Oct 2019).
| Package 816/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| INSPEcT 1.14.0 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: INSPEcT |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:INSPEcT.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings INSPEcT_1.14.0.tar.gz |
| StartedAt: 2019-10-16 04:35:13 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 05:06:15 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 1862.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: INSPEcT.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:INSPEcT.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings INSPEcT_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/INSPEcT.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'INSPEcT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'INSPEcT' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'INSPEcT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
makeSimModel 32.74 0.26 34.25
processingDelay 21.30 0.25 291.15
quantifyExpressionsFromTrCounts 15.20 0.07 15.26
newINSPEcT 13.94 0.40 317.11
compareSteadyNoNascent 9.04 0.38 9.42
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
makeSimModel 37.37 0.12 37.50
processingDelay 21.11 0.28 330.03
quantifyExpressionsFromTrCounts 16.82 0.03 16.86
newINSPEcT 15.67 0.25 338.11
compareSteadyNoNascent 7.31 0.17 7.48
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
INSPEcT.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/INSPEcT_1.14.0.tar.gz && rm -rf INSPEcT.buildbin-libdir && mkdir INSPEcT.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=INSPEcT.buildbin-libdir INSPEcT_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL INSPEcT_1.14.0.zip && rm INSPEcT_1.14.0.tar.gz INSPEcT_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3804k 100 3804k 0 0 32.0M 0 --:--:-- --:--:-- --:--:-- 34.0M
install for i386
* installing *source* package 'INSPEcT' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'INSPEcT'
finding HTML links ... done
AIC-INSPEcT-method html
Extract html
INSPEcT-class html
finding level-2 HTML links ... done
INSPEcT-shinyApps html
INSPEcT html
INSPEcT_diffsteady-class html
INSPEcT_model-class html
allcounts html
chisqmodel html
chisqtest html
combine html
compareSteady html
compareSteadyNoNascent html
dim-INSPEcT-method html
featureNames-INSPEcT-method html
featureWidths html
geneClass html
getModel html
inHeatmap html
labeledSF html
libsizes html
logLik html
makeModelRates html
makeSimDataset html
makeSimModel html
modelRates html
modelSelection html
modelingParams html
nGenes html
nTpts html
newINSPEcT html
plotGene html
plotMA html
processingDelay html
quantifyExpressionsFromBAMs html
quantifyExpressionsFromTrAbundance html
quantifyExpressionsFromTrCounts html
ratePvals html
ratesFirstGuess html
ratesFirstGuessVar html
removeModel html
rocCurve html
rocThresholds html
sfPlot html
simData3rep_Nascent html
simData3rep_NoNascent html
simData4rep_Nascent html
simData4rep_NoNascent html
split html
tpts html
viewModelRates html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'INSPEcT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'INSPEcT' as INSPEcT_1.14.0.zip
* DONE (INSPEcT)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'INSPEcT' successfully unpacked and MD5 sums checked
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INSPEcT.Rcheck/examples_i386/INSPEcT-Ex.timings
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INSPEcT.Rcheck/examples_x64/INSPEcT-Ex.timings
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