Stefano de Pretis
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/INSPEcT |
| Branch: RELEASE_3_9 |
| Last Commit: 0658703 |
| Last Changed Date: 2019-05-02 11:53:56 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:55:57 -0400 (Wed, 16 Oct 2019).
| Package 816/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| INSPEcT 1.14.0 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: INSPEcT |
| Version: 1.14.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings INSPEcT_1.14.0.tar.gz |
| StartedAt: 2019-10-16 03:50:36 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 04:16:32 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 1555.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: INSPEcT.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings INSPEcT_1.14.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/INSPEcT.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘INSPEcT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘INSPEcT’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘INSPEcT’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
modelRates 278.760 1.846 281.850
plotMA 97.755 54.038 76.982
makeSimDataset 134.950 13.710 133.056
INSPEcT_diffsteady-class 96.598 49.866 75.175
compareSteady 93.723 50.728 71.940
quantifyExpressionsFromBAMs 67.093 28.111 95.226
rocThresholds 78.326 0.324 80.045
newINSPEcT 53.338 19.969 38.447
rocCurve 72.185 0.345 72.750
makeSimModel 66.689 1.185 67.875
processingDelay 39.032 13.681 42.225
quantifyExpressionsFromTrCounts 26.249 0.282 26.532
compareSteadyNoNascent 10.826 0.910 11.737
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘INSPEcT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
| name | user | system | elapsed | |
| AIC-INSPEcT-method | 0.315 | 0.019 | 0.336 | |
| Extract | 0.402 | 0.008 | 0.410 | |
| INSPEcT-shinyApps | 0.001 | 0.000 | 0.000 | |
| INSPEcT_diffsteady-class | 96.598 | 49.866 | 75.175 | |
| chisqmodel | 0.300 | 0.047 | 0.348 | |
| chisqtest | 0.221 | 0.010 | 0.230 | |
| combine | 1.039 | 0.159 | 1.199 | |
| compareSteady | 93.723 | 50.728 | 71.940 | |
| compareSteadyNoNascent | 10.826 | 0.910 | 11.737 | |
| geneClass | 0.355 | 0.025 | 0.379 | |
| getModel | 0.162 | 0.006 | 0.168 | |
| inHeatmap | 0.293 | 0.013 | 0.307 | |
| labeledSF | 0.226 | 0.008 | 0.234 | |
| logLik | 0.267 | 0.009 | 0.279 | |
| makeModelRates | 1.760 | 0.032 | 1.797 | |
| makeSimDataset | 134.950 | 13.710 | 133.056 | |
| makeSimModel | 66.689 | 1.185 | 67.875 | |
| modelRates | 278.760 | 1.846 | 281.850 | |
| modelSelection | 0.579 | 0.011 | 0.590 | |
| modelingParams | 0.438 | 0.018 | 0.455 | |
| nGenes | 0.230 | 0.010 | 0.239 | |
| nTpts | 0.263 | 0.010 | 0.273 | |
| newINSPEcT | 53.338 | 19.969 | 38.447 | |
| plotGene | 0.340 | 0.056 | 0.396 | |
| plotMA | 97.755 | 54.038 | 76.982 | |
| processingDelay | 39.032 | 13.681 | 42.225 | |
| quantifyExpressionsFromBAMs | 67.093 | 28.111 | 95.226 | |
| quantifyExpressionsFromTrCounts | 26.249 | 0.282 | 26.532 | |
| ratePvals | 0.282 | 0.020 | 0.302 | |
| ratesFirstGuess | 0.229 | 0.011 | 0.240 | |
| ratesFirstGuessVar | 0.291 | 0.014 | 0.306 | |
| removeModel | 0.262 | 0.008 | 0.270 | |
| rocCurve | 72.185 | 0.345 | 72.750 | |
| rocThresholds | 78.326 | 0.324 | 80.045 | |
| split | 0.379 | 0.021 | 0.400 | |
| tpts | 0.155 | 0.007 | 0.161 | |
| viewModelRates | 0.217 | 0.009 | 0.226 | |