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INSTALL report for GEOmetadb on tokay2

This page was generated on 2019-10-16 12:21:45 -0400 (Wed, 16 Oct 2019).

Package 668/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GEOmetadb 1.46.0
Jack Zhu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/GEOmetadb
Branch: RELEASE_3_9
Last Commit: 27a3741
Last Changed Date: 2019-05-02 11:53:09 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GEOmetadb
Version: 1.46.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GEOmetadb_1.46.0.tar.gz && rm -rf GEOmetadb.buildbin-libdir && mkdir GEOmetadb.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GEOmetadb.buildbin-libdir GEOmetadb_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GEOmetadb_1.46.0.zip && rm GEOmetadb_1.46.0.tar.gz GEOmetadb_1.46.0.zip
StartedAt: 2019-10-15 19:43:18 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:43:44 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 25.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GEOmetadb_1.46.0.tar.gz && rm -rf GEOmetadb.buildbin-libdir && mkdir GEOmetadb.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GEOmetadb.buildbin-libdir GEOmetadb_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GEOmetadb_1.46.0.zip && rm GEOmetadb_1.46.0.tar.gz GEOmetadb_1.46.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  114k  100  114k    0     0  1891k      0 --:--:-- --:--:-- --:--:-- 2152k

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'GEOmetadb' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GEOmetadb'
    finding HTML links ... done
    GEOmetadb-package                       html  
    columnDescriptions                      html  
    geoConvert                              html  
    getBiocPlatformMap                      html  
    getSQLiteFile                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'GEOmetadb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GEOmetadb' as GEOmetadb_1.46.0.zip
* DONE (GEOmetadb)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GEOmetadb' successfully unpacked and MD5 sums checked