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BUILD report for GEOmetadb on celaya2

This page was generated on 2019-10-16 12:46:52 -0400 (Wed, 16 Oct 2019).

Package 668/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GEOmetadb 1.46.0
Jack Zhu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/GEOmetadb
Branch: RELEASE_3_9
Last Commit: 27a3741
Last Changed Date: 2019-05-02 11:53:09 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ OK ] OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GEOmetadb
Version: 1.46.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb
StartedAt: 2019-10-15 19:57:30 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:01:01 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 210.9 seconds
RetCode: 0
Status:  OK 
PackageFile: GEOmetadb_1.46.0.tar.gz
PackageFileSize: 14.59 MiB

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb
###
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* checking for file ‘GEOmetadb/DESCRIPTION’ ... OK
* preparing ‘GEOmetadb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-10_e7b0986ec29665d112d2e9397a16fb8b.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-10_e7b0986ec29665d112d2e9397a16fb8b.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-11_7c5d3f3a6ad0b539e9f924a1b0b51963.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-11_7c5d3f3a6ad0b539e9f924a1b0b51963.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-12_620838be1228cd079e465f12cb74052d.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-12_620838be1228cd079e465f12cb74052d.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-13_827feb01e24b6f0dd4522bbacf0ffd6e.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-13_827feb01e24b6f0dd4522bbacf0ffd6e.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-14_005b51476f6568639dc8d6c9dcb41d6d.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-14_005b51476f6568639dc8d6c9dcb41d6d.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-15_fefed009c121116df324f28407c9a922.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-15_fefed009c121116df324f28407c9a922.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-16_271de5ff6028ea2bb4ad8deae6abac97.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-16_271de5ff6028ea2bb4ad8deae6abac97.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-17_3d75fc4d05288293fed1021299c871c9.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-17_3d75fc4d05288293fed1021299c871c9.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-18_c13d5f63f364da32f6a28fd95b8d62db.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-18_c13d5f63f364da32f6a28fd95b8d62db.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-19_1aefa6008d92918870cce3577ae80f12.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-19_1aefa6008d92918870cce3577ae80f12.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-20_a6f13e42d055f2c7eae70d5d1c2fb977.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-20_a6f13e42d055f2c7eae70d5d1c2fb977.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-21_027c893eadc80633c4f658c7675d16ff.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-21_027c893eadc80633c4f658c7675d16ff.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-22_054081fe73de6f5aedb8157e39f5d1d3.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-22_054081fe73de6f5aedb8157e39f5d1d3.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-23_efc300b94f335da4e7642d57ebb59672.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-23_efc300b94f335da4e7642d57ebb59672.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-2_f081aaaaac8d7d9636553e1e2170a200.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-2_f081aaaaac8d7d9636553e1e2170a200.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-3_9a324b46bee6dcfeae63436356445c5a.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-3_9a324b46bee6dcfeae63436356445c5a.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-4_48ac6a74d4c87e3c7b1e250a84286739.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-4_48ac6a74d4c87e3c7b1e250a84286739.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-5_e452646e51f523e1d1677a341341d265.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-5_e452646e51f523e1d1677a341341d265.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-6_c0b6efd1d32a6d8fba31f8639e897fb1.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-6_c0b6efd1d32a6d8fba31f8639e897fb1.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-7_e5011b4917c1b4fca59f1eacfd2cd766.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-7_e5011b4917c1b4fca59f1eacfd2cd766.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-8_dc4e4224220eefa92adbe2ec001ae996.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-8_dc4e4224220eefa92adbe2ec001ae996.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-9_990885d0d9017c8f4e08b3b5c4556151.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-9_990885d0d9017c8f4e08b3b5c4556151.rdx'
* building 'GEOmetadb_1.46.0.tar.gz'