Zilu Zhou
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/iCNV |
| Branch: RELEASE_3_7 |
| Last Commit: 702eb35 |
| Last Changed Date: 2018-04-30 10:35:50 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:45:29 -0400 (Wed, 17 Oct 2018).
| Package 713/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| iCNV 1.0.0 Zilu Zhou
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: iCNV |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/iCNV_1.0.0.tar.gz && rm -rf iCNV.buildbin-libdir && mkdir iCNV.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCNV.buildbin-libdir iCNV_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL iCNV_1.0.0.zip && rm iCNV_1.0.0.tar.gz iCNV_1.0.0.zip |
| StartedAt: 2018-10-16 20:04:31 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:06:27 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 116.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/iCNV_1.0.0.tar.gz && rm -rf iCNV.buildbin-libdir && mkdir iCNV.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCNV.buildbin-libdir iCNV_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL iCNV_1.0.0.zip && rm iCNV_1.0.0.tar.gz iCNV_1.0.0.zip
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install for i386
* installing *source* package 'iCNV' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: break used in wrong context: no loop is visible
** help
*** installing help indices
converting help for package 'iCNV'
finding HTML links ... done
bambaf_from_vcf html
bed_generator html
chr html
filenm html
get_array_input html
iCNV_detection html
icnv_output_to_gb html
icnv_res0 html
ngs_baf html
ngs_baf.chr html
ngs_baf.id html
ngs_baf.nm html
ngs_baf.pos html
ngs_plr html
ngs_plr.pos html
normObj html
output_list html
plotHMMscore html
plot_intensity html
plotindi html
projname html
qcObj html
sampname html
sampname_qc html
snp_baf html
snp_baf.pos html
snp_lrr html
snp_lrr.pos html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'iCNV' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iCNV' as iCNV_1.0.0.zip
* DONE (iCNV)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'iCNV' successfully unpacked and MD5 sums checked
In R CMD INSTALL