Back to Multiple platform build/check report for BioC 3.7
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

BUILD BIN report for iCNV on tokay2

This page was generated on 2018-10-17 08:45:29 -0400 (Wed, 17 Oct 2018).

Package 713/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCNV 1.0.0
Zilu Zhou
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/iCNV
Branch: RELEASE_3_7
Last Commit: 702eb35
Last Changed Date: 2018-04-30 10:35:50 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: iCNV
Version: 1.0.0
Command: rm -rf iCNV.buildbin-libdir && mkdir iCNV.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCNV.buildbin-libdir iCNV_1.0.0.tar.gz
StartedAt: 2018-10-17 06:32:55 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:35:12 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 137.3 seconds
RetCode: 0
Status:  OK  
PackageFile: iCNV_1.0.0.zip
PackageFileSize: 1.899 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf iCNV.buildbin-libdir && mkdir iCNV.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCNV.buildbin-libdir iCNV_1.0.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'iCNV' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: break used in wrong context: no loop is visible 
** help
*** installing help indices
  converting help for package 'iCNV'
    finding HTML links ... done
    bambaf_from_vcf                         html  
    bed_generator                           html  
    chr                                     html  
    filenm                                  html  
    get_array_input                         html  
    iCNV_detection                          html  
    icnv_output_to_gb                       html  
    icnv_res0                               html  
    ngs_baf                                 html  
    ngs_baf.chr                             html  
    ngs_baf.id                              html  
    ngs_baf.nm                              html  
    ngs_baf.pos                             html  
    ngs_plr                                 html  
    ngs_plr.pos                             html  
    normObj                                 html  
    output_list                             html  
    plotHMMscore                            html  
    plot_intensity                          html  
    plotindi                                html  
    projname                                html  
    qcObj                                   html  
    sampname                                html  
    sampname_qc                             html  
    snp_baf                                 html  
    snp_baf.pos                             html  
    snp_lrr                                 html  
    snp_lrr.pos                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'iCNV' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iCNV' as iCNV_1.0.0.zip
* DONE (iCNV)
In R CMD INSTALL
In R CMD INSTALL