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INSTALL report for gdsfmt on tokay2

This page was generated on 2018-10-17 08:39:51 -0400 (Wed, 17 Oct 2018).

Package 554/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gdsfmt 1.16.0
Xiuwen Zheng
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/gdsfmt
Branch: RELEASE_3_7
Last Commit: 49b0114
Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gdsfmt
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/gdsfmt_1.16.0.tar.gz && rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gdsfmt.buildbin-libdir gdsfmt_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL gdsfmt_1.16.0.zip && rm gdsfmt_1.16.0.tar.gz gdsfmt_1.16.0.zip
StartedAt: 2018-10-16 18:34:59 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:40:04 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 304.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/gdsfmt_1.16.0.tar.gz && rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gdsfmt.buildbin-libdir gdsfmt_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL gdsfmt_1.16.0.zip && rm gdsfmt_1.16.0.tar.gz gdsfmt_1.16.0.zip
###
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install for i386

* installing *source* package 'gdsfmt' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c R_CoreArray.cpp -o R_CoreArray.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c gdsfmt.cpp -o gdsfmt.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c digest.cpp -o digest.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dAny.cpp -o CoreArray/dAny.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dBase.cpp -o CoreArray/dBase.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dFile.cpp -o CoreArray/dFile.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dStream.cpp -o CoreArray/dStream.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/adler32.c -o ZLIB/adler32.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/compress.c -o ZLIB/compress.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/crc32.c -o ZLIB/crc32.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/deflate.c -o ZLIB/deflate.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/infback.c -o ZLIB/infback.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inffast.c -o ZLIB/inffast.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inflate.c -o ZLIB/inflate.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inftrees.c -o ZLIB/inftrees.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/trees.c -o ZLIB/trees.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/uncompr.c -o ZLIB/uncompr.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/zutil.c -o ZLIB/zutil.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4.c -o LZ4/lz4.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4hc.c -o LZ4/lz4hc.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4frame.c -o LZ4/lz4frame.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.3-win.zip
cp XZ/xz-5.2.3/i386/liblzma.a .
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o liblzma.a -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gdsfmt'
    finding HTML links ... done
    add.gdsn                                html  
    addfile.gdsn                            html  
    addfolder.gdsn                          html  
    append.gdsn                             html  
    apply.gdsn                              html  
    assign.gdsn                             html  
    cache.gdsn                              html  
    cleanup.gds                             html  
    closefn.gds                             html  
    clusterApply.gdsn                       html  
    cnt.gdsn                                html  
    compression.gdsn                        html  
    copyto.gdsn                             html  
    createfn.gds                            html  
    delete.attr.gdsn                        html  
    delete.gdsn                             html  
    diagnosis.gds                           html  
    digest.gdsn                             html  
    gds.class                               html  
    gdsfmt-package                          html  
    gdsn.class                              html  
    get.attr.gdsn                           html  
    getfile.gdsn                            html  
    getfolder.gdsn                          html  
    index.gdsn                              html  
    is.element.gdsn                         html  
    lasterr.gds                             html  
    ls.gdsn                                 html  
    moveto.gdsn                             html  
    name.gdsn                               html  
    objdesp.gdsn                            html  
    openfn.gds                              html  
    permdim.gdsn                            html  
    print.gds.class                         html  
    put.attr.gdsn                           html  
    read.gdsn                               html  
    readex.gdsn                             html  
    readmode.gdsn                           html  
    rename.gdsn                             html  
    setdim.gdsn                             html  
    showfile.gds                            html  
    summarize.gdsn                          html  
    sync.gds                                html  
    system.gds                              html  
    write.gdsn                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'gdsfmt' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c R_CoreArray.cpp -o R_CoreArray.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c gdsfmt.cpp -o gdsfmt.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c digest.cpp -o digest.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dAny.cpp -o CoreArray/dAny.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dBase.cpp -o CoreArray/dBase.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dFile.cpp -o CoreArray/dFile.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dStream.cpp -o CoreArray/dStream.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/adler32.c -o ZLIB/adler32.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/compress.c -o ZLIB/compress.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/crc32.c -o ZLIB/crc32.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/deflate.c -o ZLIB/deflate.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/infback.c -o ZLIB/infback.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inffast.c -o ZLIB/inffast.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inflate.c -o ZLIB/inflate.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inftrees.c -o ZLIB/inftrees.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/trees.c -o ZLIB/trees.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/uncompr.c -o ZLIB/uncompr.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/zutil.c -o ZLIB/zutil.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4.c -o LZ4/lz4.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4hc.c -o LZ4/lz4hc.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4frame.c -o LZ4/lz4frame.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.3-win.zip
cp XZ/xz-5.2.3/x64/liblzma.a .
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o liblzma.a -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gdsfmt' as gdsfmt_1.16.0.zip
* DONE (gdsfmt)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'gdsfmt' successfully unpacked and MD5 sums checked
In R CMD INSTALL