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CHECK report for gdsfmt on tokay2

This page was generated on 2018-10-17 08:39:51 -0400 (Wed, 17 Oct 2018).

Package 554/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gdsfmt 1.16.0
Xiuwen Zheng
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/gdsfmt
Branch: RELEASE_3_7
Last Commit: 49b0114
Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gdsfmt
Version: 1.16.0
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gdsfmt.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings gdsfmt_1.16.0.tar.gz
StartedAt: 2018-10-17 02:08:25 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 02:16:09 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 463.9 seconds
RetCode: 0
Status:  OK  
CheckDir: gdsfmt.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gdsfmt.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings gdsfmt_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/gdsfmt.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gdsfmt/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gdsfmt' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gdsfmt' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.9Mb
  sub-directories of 1Mb or more:
    libs   6.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.7-bioc/R/library/gdsfmt/libs/i386/gdsfmt.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.7-bioc/meat/gdsfmt.Rcheck/00check.log'
for details.



Installation output

gdsfmt.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/gdsfmt_1.16.0.tar.gz && rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gdsfmt.buildbin-libdir gdsfmt_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL gdsfmt_1.16.0.zip && rm gdsfmt_1.16.0.tar.gz gdsfmt_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2174k  100 2174k    0     0  27.4M      0 --:--:-- --:--:-- --:--:-- 30.3M

install for i386

* installing *source* package 'gdsfmt' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c R_CoreArray.cpp -o R_CoreArray.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c gdsfmt.cpp -o gdsfmt.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c digest.cpp -o digest.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dAny.cpp -o CoreArray/dAny.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dBase.cpp -o CoreArray/dBase.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dFile.cpp -o CoreArray/dFile.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dStream.cpp -o CoreArray/dStream.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/adler32.c -o ZLIB/adler32.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/compress.c -o ZLIB/compress.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/crc32.c -o ZLIB/crc32.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/deflate.c -o ZLIB/deflate.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/infback.c -o ZLIB/infback.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inffast.c -o ZLIB/inffast.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inflate.c -o ZLIB/inflate.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inftrees.c -o ZLIB/inftrees.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/trees.c -o ZLIB/trees.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/uncompr.c -o ZLIB/uncompr.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ZLIB/zutil.c -o ZLIB/zutil.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4.c -o LZ4/lz4.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4hc.c -o LZ4/lz4hc.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4frame.c -o LZ4/lz4frame.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.3-win.zip
cp XZ/xz-5.2.3/i386/liblzma.a .
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o liblzma.a -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gdsfmt'
    finding HTML links ... done
    add.gdsn                                html  
    addfile.gdsn                            html  
    addfolder.gdsn                          html  
    append.gdsn                             html  
    apply.gdsn                              html  
    assign.gdsn                             html  
    cache.gdsn                              html  
    cleanup.gds                             html  
    closefn.gds                             html  
    clusterApply.gdsn                       html  
    cnt.gdsn                                html  
    compression.gdsn                        html  
    copyto.gdsn                             html  
    createfn.gds                            html  
    delete.attr.gdsn                        html  
    delete.gdsn                             html  
    diagnosis.gds                           html  
    digest.gdsn                             html  
    gds.class                               html  
    gdsfmt-package                          html  
    gdsn.class                              html  
    get.attr.gdsn                           html  
    getfile.gdsn                            html  
    getfolder.gdsn                          html  
    index.gdsn                              html  
    is.element.gdsn                         html  
    lasterr.gds                             html  
    ls.gdsn                                 html  
    moveto.gdsn                             html  
    name.gdsn                               html  
    objdesp.gdsn                            html  
    openfn.gds                              html  
    permdim.gdsn                            html  
    print.gds.class                         html  
    put.attr.gdsn                           html  
    read.gdsn                               html  
    readex.gdsn                             html  
    readmode.gdsn                           html  
    rename.gdsn                             html  
    setdim.gdsn                             html  
    showfile.gds                            html  
    summarize.gdsn                          html  
    sync.gds                                html  
    system.gds                              html  
    write.gdsn                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'gdsfmt' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c R_CoreArray.cpp -o R_CoreArray.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c gdsfmt.cpp -o gdsfmt.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c digest.cpp -o digest.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dAny.cpp -o CoreArray/dAny.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dBase.cpp -o CoreArray/dBase.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dFile.cpp -o CoreArray/dFile.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dStream.cpp -o CoreArray/dStream.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/adler32.c -o ZLIB/adler32.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/compress.c -o ZLIB/compress.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/crc32.c -o ZLIB/crc32.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/deflate.c -o ZLIB/deflate.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/infback.c -o ZLIB/infback.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inffast.c -o ZLIB/inffast.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inflate.c -o ZLIB/inflate.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/inftrees.c -o ZLIB/inftrees.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/trees.c -o ZLIB/trees.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/uncompr.c -o ZLIB/uncompr.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ZLIB/zutil.c -o ZLIB/zutil.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4.c -o LZ4/lz4.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4hc.c -o LZ4/lz4hc.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LZ4/lz4frame.c -o LZ4/lz4frame.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.3-win.zip
cp XZ/xz-5.2.3/x64/liblzma.a .
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o liblzma.a -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gdsfmt' as gdsfmt_1.16.0.zip
* DONE (gdsfmt)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'gdsfmt' successfully unpacked and MD5 sums checked
In R CMD INSTALL

Tests output

gdsfmt.Rcheck/tests_i386/runTests.Rout


R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> options(test.verbose=FALSE)
> BiocGenerics:::testPackage("gdsfmt")
FUNCTION: add.gdsn
FUNCTION: addfile.gdsn
FUNCTION: addfolder.gdsn
FUNCTION: append.gdsn
FUNCTION: apply.gdsn
[1]  1 11 21 31 41 51
[1]  2 12 22 32 42 52
[1]  3 13 23 33 43 53
[1]  4 14 24 34 44 54
[1]  5 15 25 35 45 55
[1]  6 16 26 36 46 56
[1]  7 17 27 37 47 57
[1]  8 18 28 38 48 58
[1]  9 19 29 39 49 59
[1] 10 20 30 40 50 60
[1]  1 21 41
[1]  3 23 43
[1]  5 25 45
[1]  7 27 47
[1]  9 29 49
index: 1, [1]  1 21 41
index: 2, [1]  3 23 43
index: 3, [1]  5 25 45
index: 4, [1]  7 27 47
index: 5, [1]  9 29 49
index: 1, [1]  1 21 41
index: 3, [1]  3 23 43
index: 5, [1]  5 25 45
index: 7, [1]  7 27 47
index: 9, [1]  9 29 49
[1] "L,1"  "L,11" "L,21" "L,31" "L,41" "L,51"
[1] "L,2"  "L,12" "L,22" "L,32" "L,42" "L,52"
[1] "L,3"  "L,13" "L,23" "L,33" "L,43" "L,53"
[1] "L,4"  "L,14" "L,24" "L,34" "L,44" "L,54"
[1] "L,5"  "L,15" "L,25" "L,35" "L,45" "L,55"
[1] "L,6"  "L,16" "L,26" "L,36" "L,46" "L,56"
[1] "L,7"  "L,17" "L,27" "L,37" "L,47" "L,57"
[1] "L,8"  "L,18" "L,28" "L,38" "L,48" "L,58"
[1] "L,9"  "L,19" "L,29" "L,39" "L,49" "L,59"
[1] "L,10" "L,20" "L,30" "L,40" "L,50" "L,60"
 [1]  1  2  3  4  5  6  7  8  9 10
 [1] 11 12 13 14 15 16 17 18 19 20
 [1] 21 22 23 24 25 26 27 28 29 30
 [1] 31 32 33 34 35 36 37 38 39 40
 [1] 41 42 43 44 45 46 47 48 49 50
 [1] 51 52 53 54 55 56 57 58 59 60
[1] 1 3 5 7 9
[1] 21 23 25 27 29
[1] 41 43 45 47 49
[1] "L,1" "L,3" "L,5" "L,7" "L,9"
[1] "L,21" "L,23" "L,25" "L,27" "L,29"
[1] "L,41" "L,43" "L,45" "L,47" "L,49"
[1]  1 11 NA NA 41 51
[1]  2 12 NA NA 42 52
[1]  3 13 NA NA 43 53
[1]  4 14 NA NA 44 54
[1]  5 15 NA NA 45 55
[1]  6 NA NA NA 46 56
[1]  7 NA NA NA 47 57
[1]  8 NA NA NA 48 58
[1]  9 NA NA NA 49 59
[1] 10 NA NA NA 50 60
 [1]  1  2  3  4  5  6  7  8  9 10
 [1] 11 12 13 14 15 NA NA NA NA NA
 [1] NA NA NA NA NA NA NA NA NA NA
 [1] NA NA NA NA NA NA NA NA NA NA
 [1] 41 42 43 44 45 46 47 48 49 50
 [1] 51 52 53 54 55 56 57 58 59 60
$X
[1]  1 11 21 31 41

$Y
[1] 0.01 0.11 0.21 0.31 0.41

$Z
[1] ABC
Levels: ABC DEF ETD TTT

$X
[1]  2 12 22 32 42

$Y
[1] 0.02 0.12 0.22 0.32 0.42

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1]  3 13 23 33 43

$Y
[1] 0.03 0.13 0.23 0.33 0.43

$Z
[1] ETD
Levels: ABC DEF ETD TTT

$X
[1]  4 14 24 34 44

$Y
[1] 0.04 0.14 0.24 0.34 0.44

$Z
[1] ABC
Levels: ABC DEF ETD TTT

$X
[1]  5 15 25 35 45

$Y
[1] 0.05 0.15 0.25 0.35 0.45

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1]  6 16 26 36 46

$Y
[1] 0.06 0.16 0.26 0.36 0.46

$Z
[1] ETD
Levels: ABC DEF ETD TTT

$X
[1]  7 17 27 37 47

$Y
[1] 0.07 0.17 0.27 0.37 0.47

$Z
[1] ABC
Levels: ABC DEF ETD TTT

$X
[1]  8 18 28 38 48

$Y
[1] 0.08 0.18 0.28 0.38 0.48

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1]  9 19 29 39 49

$Y
[1] 0.09 0.19 0.29 0.39 0.49

$Z
[1] ETD
Levels: ABC DEF ETD TTT

$X
[1] 10 20 30 40 50

$Y
[1] 0.1 0.2 0.3 0.4 0.5

$Z
[1] TTT
Levels: ABC DEF ETD TTT

$X
 [1]  1  2  3  4  5  6  7  8  9 10

$Y
 [1] 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.10

$Z
[1] TRUE

$X
 [1] 11 12 13 14 15 16 17 18 19 20

$Y
 [1] 0.11 0.12 0.13 0.14 0.15 0.16 0.17 0.18 0.19 0.20

$Z
[1] FALSE

$X
 [1] 21 22 23 24 25 26 27 28 29 30

$Y
 [1] 0.21 0.22 0.23 0.24 0.25 0.26 0.27 0.28 0.29 0.30

$Z
[1] TRUE

$X
 [1] 31 32 33 34 35 36 37 38 39 40

$Y
 [1] 0.31 0.32 0.33 0.34 0.35 0.36 0.37 0.38 0.39 0.40

$Z
[1] FALSE

$X
 [1] 41 42 43 44 45 46 47 48 49 50

$Y
 [1] 0.41 0.42 0.43 0.44 0.45 0.46 0.47 0.48 0.49 0.50

$Z
[1] TRUE

$X
 [1]  1  2  3  4  5  6  7  8  9 10

$Y
 [1] 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.10

$Z
[1] NA

$X
 [1] 11 12 13 14 15 16 17 18 19 20

$Y
 [1] 0.11 0.12 0.13 0.14 0.15 0.16 0.17 0.18 0.19 0.20

$Z
[1] FALSE

$X
 [1] 21 22 23 24 25 26 27 28 29 30

$Y
 [1] 0.21 0.22 0.23 0.24 0.25 0.26 0.27 0.28 0.29 0.30

$Z
[1] NA

$X
 [1] 31 32 33 34 NA NA NA NA NA NA

$Y
 [1] 0.31 0.32 0.33 0.34 0.35 0.36 0.37 0.38 0.39 0.40

$Z
[1] FALSE

$X
 [1] NA NA NA NA NA 46 47 48 49 50

$Y
 [1] 0.41 0.42 0.43 0.44 0.45 0.46 0.47 0.48 0.49 0.50

$Z
[1] NA

$X
 [1]  1  2  3  4  5  6  7  8  9 10

$Y
 [1] 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.10

$Z
[1] NA

$X
 [1] 11 12 13 14 15 16 17 18 19 20

$Y
 [1] 0.11 0.12 0.13 0.14 0.15 0.16 0.17 0.18 0.19 0.20

$Z
[1] FALSE

$X
 [1] 21 22 23 24 25 26 27 28 29 30

$Y
 [1] 0.21 0.22 0.23 0.24 0.25 0.26 0.27 0.28 0.29 0.30

$Z
[1] NA

$X
 [1] 31 32 33 34 NA NA NA NA NA NA

$Y
 [1] 0.31 0.32 0.33 0.34 0.35 0.36 0.37 0.38 0.39 0.40

$Z
[1] FALSE

$X
 [1] NA NA NA NA NA 46 47 48 49 50

$Y
 [1] 0.41 0.42 0.43 0.44 0.45 0.46 0.47 0.48 0.49 0.50

$Z
[1] NA

$X
[1]  2 22 42

$Y
[1] 0.02 0.22 0.42

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1]  4 24 44

$Y
[1] 0.04 0.24 0.44

$Z
[1] ABC
Levels: ABC DEF ETD TTT

$X
[1]  6 26 46

$Y
[1] 0.06 0.26 0.46

$Z
[1] ETD
Levels: ABC DEF ETD TTT

$X
[1]  8 28 48

$Y
[1] 0.08 0.28 0.48

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1] 10 30 50

$Y
[1] 0.1 0.3 0.5

$Z
[1] TTT
Levels: ABC DEF ETD TTT

$X
[1]  2  4  6  8 10

$Y
[1] 0.02 0.04 0.06 0.08 0.10

$Z
[1] TRUE

$X
[1] 22 24 26 28 30

$Y
[1] 0.22 0.24 0.26 0.28 0.30

$Z
[1] TRUE

$X
[1] 42 44 46 48 50

$Y
[1] 0.42 0.44 0.46 0.48 0.50

$Z
[1] TRUE

FUNCTION: assign.gdsn
FUNCTION: cache.gdsn
FUNCTION: cleanup.gds
Clean up the fragments of GDS file:
    open the file 'test.gds' (59.4K)
    # of fragments: 8
    save to 'test.gds.tmp'
    rename 'test.gds.tmp' (59.4K, reduced: 12B)
    # of fragments: 7
FUNCTION: closefn.gds
FUNCTION: clusterApply.gdsn
FUNCTION: cnt.gdsn
FUNCTION: compression.gdsn
FUNCTION: copyto.gdsn
FUNCTION: createfn.gds
FUNCTION: delete.attr.gdsn
FUNCTION: delete.gdsn
FUNCTION: diagnosis.gds
Clean up the fragments of GDS file:
    open the file 'test.gds' (5.2K)
    # of fragments: 5
    save to 'test.gds.tmp'
    rename 'test.gds.tmp' (5.2K, reduced: 12B)
    # of fragments: 4
FUNCTION: digest.gdsn
+ raw1   { Int8 131072, 128.0K } *< md5: d9f2acbc0e4257888758ff6ece5f8411; md5_r: d9f2acbc0e4257888758ff6ece5f8411; sha1: daf4efc3cf7278062825d7e4798142baf8ab4aba; sha256: a5b212f05fa19517c71de0853b69f984e4cc50bc4457d1ad7a78d21a8d313fe6; sha512: a55d41e3a09355ad937014a58269d90fdf2a609944ef3b3d9d2033add3a4d8b108d573c1a541fb6c06e1d53d35a6a24180fb2abe6df3e9238fdd9397e8c5edb1
+ raw1   { Int8 131072, 128.0K }
FUNCTION: gds.class
FUNCTION: gdsfmt-package
 [1]  1  2  3  4  5  6  7  8  9 10
 [1] 11 12 13 14 15 16 17 18 19 20
 [1] 21 22 23 24 25 26 27 28 29 30
 [1] 31 32 33 34 35 36 37 38 39 40
 [1] 41 42 43 44 45 46 47 48 49 50
 [1] 51 52 53 54 55 56 57 58 59 60
[1] 1 3 5 7 9
[1] 21 23 25 27 29
[1] 41 43 45 47 49
FUNCTION: gdsn.class
FUNCTION: get.attr.gdsn
FUNCTION: getfile.gdsn
FUNCTION: getfolder.gdsn
FUNCTION: index.gdsn
FUNCTION: is.element.gdsn
FUNCTION: lasterr.gds
FUNCTION: ls.gdsn
FUNCTION: moveto.gdsn
FUNCTION: name.gdsn
FUNCTION: objdesp.gdsn
FUNCTION: openfn.gds
FUNCTION: permdim.gdsn
Clean up the fragments of GDS file:
    open the file 'test.gds' (1.1K)
    # of fragments: 8
    save to 'test.gds.tmp'
    rename 'test.gds.tmp' (726B, reduced: 351B)
    # of fragments: 5
FUNCTION: print.gds.class
File: C:\Users\biocbuild\bbs-3.7-bioc\meat\gdsfmt.Rcheck\tests_i386\test.gds (224B)
+    [  ]
|--+ int   { Int32 100, 400B }
\--+ int.matrix   { Int32 100x50, 19.5K } *
File: C:\Users\biocbuild\bbs-3.7-bioc\meat\gdsfmt.Rcheck\tests_i386\test.gds (20.3K)
+    [  ]
|--+ int   { Int32 100, 400B }
\--+ int.matrix   { Int32 100x50, 19.5K } *< int: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
File: C:\Users\biocbuild\bbs-3.7-bioc\meat\gdsfmt.Rcheck\tests_i386\test.gds (20.3K)
+    [  ]
|--+ int   { Int32 100, 400B }
\--+ int.matrix   { Int32 100x50, 19.5K } *< int: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
+ int   { Int32 100, 400B }
Preview:
  1
  2
  3
  4
  5
  6
...
 95
 96
 97
 98
 99
100
+ int.matrix   { Int32 100x50, 19.5K } *< int: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Preview:
   1  101  201  301  401  501 .. 4401 4501 4601 4701 4801 4901
   2  102  202  302  402  502 .. 4402 4502 4602 4702 4802 4902
   3  103  203  303  403  503 .. 4403 4503 4603 4703 4803 4903
   4  104  204  304  404  504 .. 4404 4504 4604 4704 4804 4904
   5  105  205  305  405  505 .. 4405 4505 4605 4705 4805 4905
   6  106  206  306  406  506 .. 4406 4506 4606 4706 4806 4906
......            
  95  195  295  395  495  595 .. 4495 4595 4695 4795 4895 4995
  96  196  296  396  496  596 .. 4496 4596 4696 4796 4896 4996
  97  197  297  397  497  597 .. 4497 4597 4697 4797 4897 4997
  98  198  298  398  498  598 .. 4498 4598 4698 4798 4898 4998
  99  199  299  399  499  599 .. 4499 4599 4699 4799 4899 4999
 100  200  300  400  500  600 .. 4500 4600 4700 4800 4900 5000
FUNCTION: put.attr.gdsn
FUNCTION: read.gdsn
FUNCTION: readex.gdsn
FUNCTION: readmode.gdsn
FUNCTION: rename.gdsn
FUNCTION: setdim.gdsn
FUNCTION: showfile.gds
                                                                       FileName
1 C:\\Users\\biocbuild\\bbs-3.7-bioc\\meat\\gdsfmt.Rcheck\\tests_i386\\test.gds
  ReadOnly State
1    FALSE  open
                                                                       FileName
1 C:\\Users\\biocbuild\\bbs-3.7-bioc\\meat\\gdsfmt.Rcheck\\tests_i386\\test.gds
  ReadOnly  State
1    FALSE closed
FUNCTION: summarize.gdsn
FUNCTION: sync.gds
FUNCTION: system.gds
FUNCTION: write.gdsn


RUNIT TEST PROTOCOL -- Wed Oct 17 02:13:01 2018 
*********************************************** 
Number of test functions: 25 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
gdsfmt RUnit Tests - 25 test functions, 0 errors, 0 failures
Number of test functions: 25 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 167.64   17.57  227.65 

gdsfmt.Rcheck/tests_x64/runTests.Rout


R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> options(test.verbose=FALSE)
> BiocGenerics:::testPackage("gdsfmt")
FUNCTION: add.gdsn
FUNCTION: addfile.gdsn
FUNCTION: addfolder.gdsn
FUNCTION: append.gdsn
FUNCTION: apply.gdsn
[1]  1 11 21 31 41 51
[1]  2 12 22 32 42 52
[1]  3 13 23 33 43 53
[1]  4 14 24 34 44 54
[1]  5 15 25 35 45 55
[1]  6 16 26 36 46 56
[1]  7 17 27 37 47 57
[1]  8 18 28 38 48 58
[1]  9 19 29 39 49 59
[1] 10 20 30 40 50 60
[1]  1 21 41
[1]  3 23 43
[1]  5 25 45
[1]  7 27 47
[1]  9 29 49
index: 1, [1]  1 21 41
index: 2, [1]  3 23 43
index: 3, [1]  5 25 45
index: 4, [1]  7 27 47
index: 5, [1]  9 29 49
index: 1, [1]  1 21 41
index: 3, [1]  3 23 43
index: 5, [1]  5 25 45
index: 7, [1]  7 27 47
index: 9, [1]  9 29 49
[1] "L,1"  "L,11" "L,21" "L,31" "L,41" "L,51"
[1] "L,2"  "L,12" "L,22" "L,32" "L,42" "L,52"
[1] "L,3"  "L,13" "L,23" "L,33" "L,43" "L,53"
[1] "L,4"  "L,14" "L,24" "L,34" "L,44" "L,54"
[1] "L,5"  "L,15" "L,25" "L,35" "L,45" "L,55"
[1] "L,6"  "L,16" "L,26" "L,36" "L,46" "L,56"
[1] "L,7"  "L,17" "L,27" "L,37" "L,47" "L,57"
[1] "L,8"  "L,18" "L,28" "L,38" "L,48" "L,58"
[1] "L,9"  "L,19" "L,29" "L,39" "L,49" "L,59"
[1] "L,10" "L,20" "L,30" "L,40" "L,50" "L,60"
 [1]  1  2  3  4  5  6  7  8  9 10
 [1] 11 12 13 14 15 16 17 18 19 20
 [1] 21 22 23 24 25 26 27 28 29 30
 [1] 31 32 33 34 35 36 37 38 39 40
 [1] 41 42 43 44 45 46 47 48 49 50
 [1] 51 52 53 54 55 56 57 58 59 60
[1] 1 3 5 7 9
[1] 21 23 25 27 29
[1] 41 43 45 47 49
[1] "L,1" "L,3" "L,5" "L,7" "L,9"
[1] "L,21" "L,23" "L,25" "L,27" "L,29"
[1] "L,41" "L,43" "L,45" "L,47" "L,49"
[1]  1 11 NA NA 41 51
[1]  2 12 NA NA 42 52
[1]  3 13 NA NA 43 53
[1]  4 14 NA NA 44 54
[1]  5 15 NA NA 45 55
[1]  6 NA NA NA 46 56
[1]  7 NA NA NA 47 57
[1]  8 NA NA NA 48 58
[1]  9 NA NA NA 49 59
[1] 10 NA NA NA 50 60
 [1]  1  2  3  4  5  6  7  8  9 10
 [1] 11 12 13 14 15 NA NA NA NA NA
 [1] NA NA NA NA NA NA NA NA NA NA
 [1] NA NA NA NA NA NA NA NA NA NA
 [1] 41 42 43 44 45 46 47 48 49 50
 [1] 51 52 53 54 55 56 57 58 59 60
$X
[1]  1 11 21 31 41

$Y
[1] 0.01 0.11 0.21 0.31 0.41

$Z
[1] ABC
Levels: ABC DEF ETD TTT

$X
[1]  2 12 22 32 42

$Y
[1] 0.02 0.12 0.22 0.32 0.42

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1]  3 13 23 33 43

$Y
[1] 0.03 0.13 0.23 0.33 0.43

$Z
[1] ETD
Levels: ABC DEF ETD TTT

$X
[1]  4 14 24 34 44

$Y
[1] 0.04 0.14 0.24 0.34 0.44

$Z
[1] ABC
Levels: ABC DEF ETD TTT

$X
[1]  5 15 25 35 45

$Y
[1] 0.05 0.15 0.25 0.35 0.45

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1]  6 16 26 36 46

$Y
[1] 0.06 0.16 0.26 0.36 0.46

$Z
[1] ETD
Levels: ABC DEF ETD TTT

$X
[1]  7 17 27 37 47

$Y
[1] 0.07 0.17 0.27 0.37 0.47

$Z
[1] ABC
Levels: ABC DEF ETD TTT

$X
[1]  8 18 28 38 48

$Y
[1] 0.08 0.18 0.28 0.38 0.48

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1]  9 19 29 39 49

$Y
[1] 0.09 0.19 0.29 0.39 0.49

$Z
[1] ETD
Levels: ABC DEF ETD TTT

$X
[1] 10 20 30 40 50

$Y
[1] 0.1 0.2 0.3 0.4 0.5

$Z
[1] TTT
Levels: ABC DEF ETD TTT

$X
 [1]  1  2  3  4  5  6  7  8  9 10

$Y
 [1] 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.10

$Z
[1] TRUE

$X
 [1] 11 12 13 14 15 16 17 18 19 20

$Y
 [1] 0.11 0.12 0.13 0.14 0.15 0.16 0.17 0.18 0.19 0.20

$Z
[1] FALSE

$X
 [1] 21 22 23 24 25 26 27 28 29 30

$Y
 [1] 0.21 0.22 0.23 0.24 0.25 0.26 0.27 0.28 0.29 0.30

$Z
[1] TRUE

$X
 [1] 31 32 33 34 35 36 37 38 39 40

$Y
 [1] 0.31 0.32 0.33 0.34 0.35 0.36 0.37 0.38 0.39 0.40

$Z
[1] FALSE

$X
 [1] 41 42 43 44 45 46 47 48 49 50

$Y
 [1] 0.41 0.42 0.43 0.44 0.45 0.46 0.47 0.48 0.49 0.50

$Z
[1] TRUE

$X
 [1]  1  2  3  4  5  6  7  8  9 10

$Y
 [1] 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.10

$Z
[1] NA

$X
 [1] 11 12 13 14 15 16 17 18 19 20

$Y
 [1] 0.11 0.12 0.13 0.14 0.15 0.16 0.17 0.18 0.19 0.20

$Z
[1] FALSE

$X
 [1] 21 22 23 24 25 26 27 28 29 30

$Y
 [1] 0.21 0.22 0.23 0.24 0.25 0.26 0.27 0.28 0.29 0.30

$Z
[1] NA

$X
 [1] 31 32 33 34 NA NA NA NA NA NA

$Y
 [1] 0.31 0.32 0.33 0.34 0.35 0.36 0.37 0.38 0.39 0.40

$Z
[1] FALSE

$X
 [1] NA NA NA NA NA 46 47 48 49 50

$Y
 [1] 0.41 0.42 0.43 0.44 0.45 0.46 0.47 0.48 0.49 0.50

$Z
[1] NA

$X
 [1]  1  2  3  4  5  6  7  8  9 10

$Y
 [1] 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.10

$Z
[1] NA

$X
 [1] 11 12 13 14 15 16 17 18 19 20

$Y
 [1] 0.11 0.12 0.13 0.14 0.15 0.16 0.17 0.18 0.19 0.20

$Z
[1] FALSE

$X
 [1] 21 22 23 24 25 26 27 28 29 30

$Y
 [1] 0.21 0.22 0.23 0.24 0.25 0.26 0.27 0.28 0.29 0.30

$Z
[1] NA

$X
 [1] 31 32 33 34 NA NA NA NA NA NA

$Y
 [1] 0.31 0.32 0.33 0.34 0.35 0.36 0.37 0.38 0.39 0.40

$Z
[1] FALSE

$X
 [1] NA NA NA NA NA 46 47 48 49 50

$Y
 [1] 0.41 0.42 0.43 0.44 0.45 0.46 0.47 0.48 0.49 0.50

$Z
[1] NA

$X
[1]  2 22 42

$Y
[1] 0.02 0.22 0.42

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1]  4 24 44

$Y
[1] 0.04 0.24 0.44

$Z
[1] ABC
Levels: ABC DEF ETD TTT

$X
[1]  6 26 46

$Y
[1] 0.06 0.26 0.46

$Z
[1] ETD
Levels: ABC DEF ETD TTT

$X
[1]  8 28 48

$Y
[1] 0.08 0.28 0.48

$Z
[1] DEF
Levels: ABC DEF ETD TTT

$X
[1] 10 30 50

$Y
[1] 0.1 0.3 0.5

$Z
[1] TTT
Levels: ABC DEF ETD TTT

$X
[1]  2  4  6  8 10

$Y
[1] 0.02 0.04 0.06 0.08 0.10

$Z
[1] TRUE

$X
[1] 22 24 26 28 30

$Y
[1] 0.22 0.24 0.26 0.28 0.30

$Z
[1] TRUE

$X
[1] 42 44 46 48 50

$Y
[1] 0.42 0.44 0.46 0.48 0.50

$Z
[1] TRUE

FUNCTION: assign.gdsn
FUNCTION: cache.gdsn
FUNCTION: cleanup.gds
Clean up the fragments of GDS file:
    open the file 'test.gds' (59.4K)
    # of fragments: 8
    save to 'test.gds.tmp'
    rename 'test.gds.tmp' (59.4K, reduced: 12B)
    # of fragments: 7
FUNCTION: closefn.gds
FUNCTION: clusterApply.gdsn
FUNCTION: cnt.gdsn
FUNCTION: compression.gdsn
FUNCTION: copyto.gdsn
FUNCTION: createfn.gds
FUNCTION: delete.attr.gdsn
FUNCTION: delete.gdsn
FUNCTION: diagnosis.gds
Clean up the fragments of GDS file:
    open the file 'test.gds' (5.2K)
    # of fragments: 5
    save to 'test.gds.tmp'
    rename 'test.gds.tmp' (5.2K, reduced: 12B)
    # of fragments: 4
FUNCTION: digest.gdsn
+ raw1   { Int8 131072, 128.0K } *< md5: d9f2acbc0e4257888758ff6ece5f8411; md5_r: d9f2acbc0e4257888758ff6ece5f8411; sha1: daf4efc3cf7278062825d7e4798142baf8ab4aba; sha256: a5b212f05fa19517c71de0853b69f984e4cc50bc4457d1ad7a78d21a8d313fe6; sha512: a55d41e3a09355ad937014a58269d90fdf2a609944ef3b3d9d2033add3a4d8b108d573c1a541fb6c06e1d53d35a6a24180fb2abe6df3e9238fdd9397e8c5edb1
+ raw1   { Int8 131072, 128.0K }
FUNCTION: gds.class
FUNCTION: gdsfmt-package
 [1]  1  2  3  4  5  6  7  8  9 10
 [1] 11 12 13 14 15 16 17 18 19 20
 [1] 21 22 23 24 25 26 27 28 29 30
 [1] 31 32 33 34 35 36 37 38 39 40
 [1] 41 42 43 44 45 46 47 48 49 50
 [1] 51 52 53 54 55 56 57 58 59 60
[1] 1 3 5 7 9
[1] 21 23 25 27 29
[1] 41 43 45 47 49
FUNCTION: gdsn.class
FUNCTION: get.attr.gdsn
FUNCTION: getfile.gdsn
FUNCTION: getfolder.gdsn
FUNCTION: index.gdsn
FUNCTION: is.element.gdsn
FUNCTION: lasterr.gds
FUNCTION: ls.gdsn
FUNCTION: moveto.gdsn
FUNCTION: name.gdsn
FUNCTION: objdesp.gdsn
FUNCTION: openfn.gds
FUNCTION: permdim.gdsn
Clean up the fragments of GDS file:
    open the file 'test.gds' (1.1K)
    # of fragments: 8
    save to 'test.gds.tmp'
    rename 'test.gds.tmp' (726B, reduced: 351B)
    # of fragments: 5
FUNCTION: print.gds.class
File: C:\Users\biocbuild\bbs-3.7-bioc\meat\gdsfmt.Rcheck\tests_x64\test.gds (224B)
+    [  ]
|--+ int   { Int32 100, 400B }
\--+ int.matrix   { Int32 100x50, 19.5K } *
File: C:\Users\biocbuild\bbs-3.7-bioc\meat\gdsfmt.Rcheck\tests_x64\test.gds (20.3K)
+    [  ]
|--+ int   { Int32 100, 400B }
\--+ int.matrix   { Int32 100x50, 19.5K } *< int: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
File: C:\Users\biocbuild\bbs-3.7-bioc\meat\gdsfmt.Rcheck\tests_x64\test.gds (20.3K)
+    [  ]
|--+ int   { Int32 100, 400B }
\--+ int.matrix   { Int32 100x50, 19.5K } *< int: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
+ int   { Int32 100, 400B }
Preview:
  1
  2
  3
  4
  5
  6
...
 95
 96
 97
 98
 99
100
+ int.matrix   { Int32 100x50, 19.5K } *< int: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Preview:
   1  101  201  301  401  501 .. 4401 4501 4601 4701 4801 4901
   2  102  202  302  402  502 .. 4402 4502 4602 4702 4802 4902
   3  103  203  303  403  503 .. 4403 4503 4603 4703 4803 4903
   4  104  204  304  404  504 .. 4404 4504 4604 4704 4804 4904
   5  105  205  305  405  505 .. 4405 4505 4605 4705 4805 4905
   6  106  206  306  406  506 .. 4406 4506 4606 4706 4806 4906
......            
  95  195  295  395  495  595 .. 4495 4595 4695 4795 4895 4995
  96  196  296  396  496  596 .. 4496 4596 4696 4796 4896 4996
  97  197  297  397  497  597 .. 4497 4597 4697 4797 4897 4997
  98  198  298  398  498  598 .. 4498 4598 4698 4798 4898 4998
  99  199  299  399  499  599 .. 4499 4599 4699 4799 4899 4999
 100  200  300  400  500  600 .. 4500 4600 4700 4800 4900 5000
FUNCTION: put.attr.gdsn
FUNCTION: read.gdsn
FUNCTION: readex.gdsn
FUNCTION: readmode.gdsn
FUNCTION: rename.gdsn
FUNCTION: setdim.gdsn
FUNCTION: showfile.gds
                                                                      FileName
1 C:\\Users\\biocbuild\\bbs-3.7-bioc\\meat\\gdsfmt.Rcheck\\tests_x64\\test.gds
  ReadOnly State
1    FALSE  open
                                                                      FileName
1 C:\\Users\\biocbuild\\bbs-3.7-bioc\\meat\\gdsfmt.Rcheck\\tests_x64\\test.gds
  ReadOnly  State
1    FALSE closed
FUNCTION: summarize.gdsn
FUNCTION: sync.gds
FUNCTION: system.gds
FUNCTION: write.gdsn


RUNIT TEST PROTOCOL -- Wed Oct 17 02:16:02 2018 
*********************************************** 
Number of test functions: 25 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
gdsfmt RUnit Tests - 25 test functions, 0 errors, 0 failures
Number of test functions: 25 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 162.31   15.60  180.54 

Example timings

gdsfmt.Rcheck/examples_i386/gdsfmt-Ex.timings

nameusersystemelapsed
add.gdsn0.110.000.39
addfile.gdsn0.000.000.03
addfolder.gdsn0.010.000.11
append.gdsn0.040.000.06
apply.gdsn0.040.020.11
assign.gdsn0.030.000.10
cache.gdsn0.020.000.06
cleanup.gds0.000.000.06
closefn.gds0.000.000.05
clusterApply.gdsn0.040.010.78
cnt.gdsn000
compression.gdsn0.000.000.06
copyto.gdsn0.030.000.08
createfn.gds0.020.000.01
delete.attr.gdsn0.000.000.04
delete.gdsn0.010.000.01
diagnosis.gds0.020.000.06
digest.gdsn0.090.000.21
gdsfmt-package0.050.000.11
get.attr.gdsn0.020.000.03
getfile.gdsn0.000.000.06
getfolder.gdsn0.030.010.09
index.gdsn0.010.000.01
is.element.gdsn0.020.000.07
lasterr.gds000
ls.gdsn000
moveto.gdsn0.040.000.08
name.gdsn000
objdesp.gdsn0.020.000.03
openfn.gds0.010.000.01
permdim.gdsn0.020.020.05
print.gds.class0.010.000.06
put.attr.gdsn0.000.000.05
read.gdsn0.030.000.08
readex.gdsn0.000.000.04
readmode.gdsn0.020.000.02
rename.gdsn0.020.000.02
setdim.gdsn0.010.000.04
showfile.gds0.020.000.05
summarize.gdsn0.000.000.06
sync.gds0.000.000.06
system.gds000
write.gdsn0.010.000.02

gdsfmt.Rcheck/examples_x64/gdsfmt-Ex.timings

nameusersystemelapsed
add.gdsn0.120.020.22
addfile.gdsn0.000.000.05
addfolder.gdsn0.020.000.11
append.gdsn0.030.000.06
apply.gdsn0.050.010.11
assign.gdsn0.040.000.09
cache.gdsn0.000.020.04
cleanup.gds0.020.010.07
closefn.gds0.000.000.05
clusterApply.gdsn0.080.000.89
cnt.gdsn000
compression.gdsn0.000.000.05
copyto.gdsn0.040.000.09
createfn.gds0.040.000.03
delete.attr.gdsn0.010.000.06
delete.gdsn0.030.000.03
diagnosis.gds0.020.000.05
digest.gdsn0.060.020.33
gdsfmt-package0.050.010.09
get.attr.gdsn0.000.000.21
getfile.gdsn0.010.000.07
getfolder.gdsn0.070.000.27
index.gdsn0.030.000.03
is.element.gdsn0.010.000.39
lasterr.gds000
ls.gdsn000
moveto.gdsn0.030.000.08
name.gdsn000
objdesp.gdsn0.010.000.03
openfn.gds0.020.000.02
permdim.gdsn0.010.000.03
print.gds.class0.030.000.20
put.attr.gdsn0.000.000.06
read.gdsn0.030.000.08
readex.gdsn0.020.000.05
readmode.gdsn000
rename.gdsn0.010.000.01
setdim.gdsn0.020.000.30
showfile.gds0.000.000.05
summarize.gdsn0.000.000.03
sync.gds0.000.000.06
system.gds000
write.gdsn0.020.000.02