VJ Carey
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/GGBase |
| Branch: RELEASE_3_7 |
| Last Commit: f1312ed |
| Last Changed Date: 2018-04-30 10:35:08 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:33:49 -0400 (Wed, 17 Oct 2018).
| Package 612/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GGBase 3.42.0 VJ Carey
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GGBase |
| Version: 3.42.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GGBase_3.42.0.tar.gz && rm -rf GGBase.buildbin-libdir && mkdir GGBase.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GGBase.buildbin-libdir GGBase_3.42.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GGBase_3.42.0.zip && rm GGBase_3.42.0.tar.gz GGBase_3.42.0.zip |
| StartedAt: 2018-10-16 19:34:42 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:35:29 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 46.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GGBase_3.42.0.tar.gz && rm -rf GGBase.buildbin-libdir && mkdir GGBase.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GGBase.buildbin-libdir GGBase_3.42.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GGBase_3.42.0.zip && rm GGBase_3.42.0.tar.gz GGBase_3.42.0.zip
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install for i386
* installing *source* package 'GGBase' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GGBase'
finding HTML links ... done
MAFfilter html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/MAFfilter.Rd:37: file link 'col.summary' in package 'snpStats' does not exist and so has been treated as a topic
clipPCs html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/clipPCs.Rd:27: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/clipPCs.Rd:31: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
externalize html
make_smlSet html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/make_smlSet.Rd:22: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
plot_EvG html
rsid-class html
finding level-2 HTML links ... done
smlSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/smlSet-class.Rd:35: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/smlSet-class.Rd:37: file link 'AnnotatedDataFrame-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/smlSet-class.Rd:41: file link 'MIAxE-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/smlSet-class.Rd:44: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp42YHZM/R.INSTALL13fc6369561b/GGBase/man/smlSet-class.Rd:65: file link 'nsFilter,ExpressionSet-method' in package 'genefilter' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GGBase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GGBase' as GGBase_3.42.0.zip
* DONE (GGBase)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GGBase' successfully unpacked and MD5 sums checked
In R CMD INSTALL