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BUILD BIN report for GGBase on tokay2

This page was generated on 2018-10-17 08:33:49 -0400 (Wed, 17 Oct 2018).

Package 612/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GGBase 3.42.0
VJ Carey
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GGBase
Branch: RELEASE_3_7
Last Commit: f1312ed
Last Changed Date: 2018-04-30 10:35:08 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GGBase
Version: 3.42.0
Command: rm -rf GGBase.buildbin-libdir && mkdir GGBase.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GGBase.buildbin-libdir GGBase_3.42.0.tar.gz
StartedAt: 2018-10-17 06:23:55 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:24:28 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 33.6 seconds
RetCode: 0
Status:  OK  
PackageFile: GGBase_3.42.0.zip
PackageFileSize: 944.4 KiB

Command output

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### Running command:
###
###   rm -rf GGBase.buildbin-libdir && mkdir GGBase.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GGBase.buildbin-libdir GGBase_3.42.0.tar.gz
###
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install for i386

* installing *source* package 'GGBase' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GGBase'
    finding HTML links ... done
    MAFfilter                               html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/MAFfilter.Rd:37: file link 'col.summary' in package 'snpStats' does not exist and so has been treated as a topic
    clipPCs                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/clipPCs.Rd:27: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/clipPCs.Rd:31: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    externalize                             html  
    make_smlSet                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/make_smlSet.Rd:22: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    plot_EvG                                html  
    rsid-class                              html  
    finding level-2 HTML links ... done

    smlSet-class                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/smlSet-class.Rd:35: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/smlSet-class.Rd:37: file link 'AnnotatedDataFrame-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/smlSet-class.Rd:41: file link 'MIAxE-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/smlSet-class.Rd:44: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCQVsbc/R.INSTALL184431891fb6/GGBase/man/smlSet-class.Rd:65: file link 'nsFilter,ExpressionSet-method' in package 'genefilter' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GGBase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GGBase' as GGBase_3.42.0.zip
* DONE (GGBase)
In R CMD INSTALL
In R CMD INSTALL