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CHECK report for ComplexHeatmap on tokay1

This page was generated on 2018-04-12 13:26:00 -0400 (Thu, 12 Apr 2018).

Package 283/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ComplexHeatmap 1.17.1
Zuguang Gu
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/ComplexHeatmap
Branch: RELEASE_3_6
Last Commit: f647c97
Last Changed Date: 2018-04-10 08:13:37 -0400 (Tue, 10 Apr 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ComplexHeatmap
Version: 1.17.1
Command: rm -rf ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && mkdir ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.17.1.tar.gz >ComplexHeatmap.Rcheck\00install.out 2>&1 && cp ComplexHeatmap.Rcheck\00install.out ComplexHeatmap-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ComplexHeatmap.buildbin-libdir --install="check:ComplexHeatmap-install.out" --force-multiarch --no-vignettes --timings ComplexHeatmap_1.17.1.tar.gz
StartedAt: 2018-04-11 23:08:51 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 23:11:54 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 183.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: ComplexHeatmap.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && mkdir ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.17.1.tar.gz >ComplexHeatmap.Rcheck\00install.out 2>&1 && cp ComplexHeatmap.Rcheck\00install.out ComplexHeatmap-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ComplexHeatmap.buildbin-libdir --install="check:ComplexHeatmap-install.out" --force-multiarch --no-vignettes --timings ComplexHeatmap_1.17.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ComplexHeatmap.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ComplexHeatmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ComplexHeatmap' version '1.17.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ComplexHeatmap' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/ColorMapping-class.rd:21: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/Legend.rd:51: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/Legend.rd:48: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/annotation_legend_size-HeatmapList-method.rd:16: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/color_mapping_legend-ColorMapping-method.rd:60: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_annotation.rd:23: missing file link 'seekViewport'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_dend.rd:25: missing file link 'seekViewport'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_dimnames.rd:25: missing file link 'seekViewport'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_heatmap_body.rd:23: missing file link 'seekViewport'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_title.rd:25: missing file link 'seekViewport'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/dist2.rd:16: missing file link 'as.dist'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw-HeatmapList-method.rd:43: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw-HeatmapList-method.rd:46: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw_annotation_legend-HeatmapList-method.rd:16: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw_heatmap_legend-HeatmapList-method.rd:16: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/enhanced_basicplot.rd:32: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/heatmap_legend_size-HeatmapList-method.rd:16: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/is_abs_unit.rd:19: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:53: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:56: missing file link 'grob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_height.rd:15: missing file link 'textGrob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_height.rd:19: missing file link 'textGrob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_width.rd:15: missing file link 'textGrob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_width.rd:19: missing file link 'textGrob'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/packLegend.rd:20: missing file link 'grob'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ComplexHeatmap.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
  MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
Heatmap 17.22      0   17.22
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
Heatmap        25.07   0.01   25.09
densityHeatmap  6.31   0.00    6.31
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R'
 OK
** running tests for arch 'x64' ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/ComplexHeatmap.Rcheck/00check.log'
for details.



Installation output

ComplexHeatmap.Rcheck/00install.out


install for i386

* installing *source* package 'ComplexHeatmap' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ComplexHeatmap'
    finding HTML links ... done
    AdditiveUnit-class                      html  
    AdditiveUnit                            html  
    ColorMapping-class                      html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/ColorMapping-class.rd:21: missing file link 'grob'
    ColorMapping                            html  
    ComplexHeatmap-package                  html  
    Heatmap-class                           html  
    Heatmap                                 html  
    HeatmapAnnotation-class                 html  
    HeatmapAnnotation                       html  
    HeatmapList-class                       html  
    HeatmapList                             html  
    Legend                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/Legend.rd:51: missing file link 'grob'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/Legend.rd:48: missing file link 'grob'
    SingleAnnotation-class                  html  
    SingleAnnotation                        html  
    add.AdditiveUnit                        html  
    add_heatmap-Heatmap-method              html  
    add_heatmap-HeatmapAnnotation-method    html  
    add_heatmap-HeatmapList-method          html  
    add_heatmap-dispatch                    html  
    adjust_dend_by_leaf_width               html  
    anno_barplot                            html  
    anno_boxplot                            html  
    anno_density                            html  
    anno_histogram                          html  
    anno_link                               html  
    anno_oncoprint_barplot                  html  
    anno_points                             html  
    anno_text                               html  
    annotation_legend_size-HeatmapList-method
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/annotation_legend_size-HeatmapList-method.rd:16: missing file link 'grob'
    color_mapping_legend-ColorMapping-method
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/color_mapping_legend-ColorMapping-method.rd:60: missing file link 'grob'
    columnAnnotation                        html  
    column_anno_barplot                     html  
    column_anno_boxplot                     html  
    column_anno_density                     html  
    column_anno_histogram                   html  
    column_anno_link                        html  
    column_anno_points                      html  
    column_anno_text                        html  
    column_dend-Heatmap-method              html  
    column_dend-HeatmapList-method          html  
    column_dend-dispatch                    html  
    column_order-Heatmap-method             html  
    column_order-HeatmapList-method         html  
    column_order-dispatch                   html  
    component_height-Heatmap-method         html  
    component_height-HeatmapList-method     html  
    component_height-dispatch               html  
    component_width-Heatmap-method          html  
    component_width-HeatmapList-method      html  
    component_width-dispatch                html  
    decorate_annotation                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_annotation.rd:23: missing file link 'seekViewport'
    decorate_column_dend                    html  
    decorate_column_names                   html  
    decorate_column_title                   html  
    decorate_dend                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_dend.rd:25: missing file link 'seekViewport'
    decorate_dimnames                       html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_dimnames.rd:25: missing file link 'seekViewport'
    decorate_heatmap_body                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_heatmap_body.rd:23: missing file link 'seekViewport'
    decorate_row_dend                       html  
    decorate_row_names                      html  
    decorate_row_title                      html  
    decorate_title                          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_title.rd:25: missing file link 'seekViewport'
    densityHeatmap                          html  
    dist2                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/dist2.rd:16: missing file link 'as.dist'
    draw-Heatmap-method                     html  
    draw-HeatmapAnnotation-method           html  
    draw-HeatmapList-method                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw-HeatmapList-method.rd:43: missing file link 'grob'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw-HeatmapList-method.rd:46: missing file link 'grob'
    draw-SingleAnnotation-method            html  
    draw-dispatch                           html  
    draw_annotation-Heatmap-method          html  
    draw_annotation_legend-HeatmapList-method
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw_annotation_legend-HeatmapList-method.rd:16: missing file link 'grob'
    draw_dend-Heatmap-method                html  
    draw_dimnames-Heatmap-method            html  
    draw_heatmap_body-Heatmap-method        html  
    draw_heatmap_legend-HeatmapList-method
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw_heatmap_legend-HeatmapList-method.rd:16: missing file link 'grob'
    draw_heatmap_list-HeatmapList-method    html  
    draw_title-Heatmap-method               html  
    draw_title-HeatmapList-method           html  
    draw_title-dispatch                     html  
    enhanced_basicplot                      html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/enhanced_basicplot.rd:32: missing file link 'grob'
    get_color_mapping_list-HeatmapAnnotation-method
                                            html  
    get_color_mapping_param_list-HeatmapAnnotation-method
                                            html  
    grid.dendrogram                         html  
    grid.dendrogram2                        html  
    heatmap_legend_size-HeatmapList-method
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/heatmap_legend_size-HeatmapList-method.rd:16: missing file link 'grob'
    ht_global_opt                           html  
    is_abs_unit                             html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/is_abs_unit.rd:19: missing file link 'grob'
    make_column_cluster-Heatmap-method      html  
    make_layout-Heatmap-method              html  
    make_layout-HeatmapList-method          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:53: missing file link 'grob'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:56: missing file link 'grob'
    make_layout-dispatch                    html  
    make_row_cluster-Heatmap-method         html  
    map_to_colors-ColorMapping-method       html  
    max_text_height                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_height.rd:15: missing file link 'textGrob'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_height.rd:19: missing file link 'textGrob'
    max_text_width                          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_width.rd:15: missing file link 'textGrob'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_width.rd:19: missing file link 'textGrob'
    oncoPrint                               html  
    packLegend                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/packLegend.rd:20: missing file link 'grob'
    plotDataFrame                           html  
    prepare-Heatmap-method                  html  
    rowAnnotation                           html  
    row_anno_barplot                        html  
    row_anno_boxplot                        html  
    row_anno_density                        html  
    row_anno_histogram                      html  
    row_anno_link                           html  
    row_anno_points                         html  
    row_anno_text                           html  
    row_dend-Heatmap-method                 html  
    row_dend-HeatmapList-method             html  
    row_dend-dispatch                       html  
    row_order-Heatmap-method                html  
    row_order-HeatmapList-method            html  
    row_order-dispatch                      html  
    selectArea                              html  
    set_component_height-Heatmap-method     html  
    show-ColorMapping-method                html  
    show-Heatmap-method                     html  
    show-HeatmapAnnotation-method           html  
    show-HeatmapList-method                 html  
    show-SingleAnnotation-method            html  
    show-dispatch                           html  
    unify_mat_list                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'ComplexHeatmap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ComplexHeatmap' as ComplexHeatmap_1.17.1.zip
* DONE (ComplexHeatmap)
In R CMD INSTALL
In R CMD INSTALL

Tests output

ComplexHeatmap.Rcheck/tests_i386/test-all.Rout


R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap)))
> 
> test_check("ComplexHeatmap")
== testthat results  ===========================================================
OK: 17 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
   1.28    0.04    1.39 

ComplexHeatmap.Rcheck/tests_x64/test-all.Rout


R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap)))
> 
> test_check("ComplexHeatmap")
== testthat results  ===========================================================
OK: 17 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
   1.60    0.04    1.65 

Example timings

ComplexHeatmap.Rcheck/examples_i386/ComplexHeatmap-Ex.timings

nameusersystemelapsed
AdditiveUnit-class000
AdditiveUnit000
ColorMapping-class000
ColorMapping0.170.000.17
ComplexHeatmap-package000
Heatmap-class000
Heatmap17.22 0.0017.22
HeatmapAnnotation-class000
HeatmapAnnotation0.20.00.2
HeatmapList-class4.050.004.05
HeatmapList000
Legend0.250.000.25
SingleAnnotation-class0.020.000.01
SingleAnnotation0.120.000.13
add.AdditiveUnit3.890.003.89
add_heatmap-Heatmap-method1.140.001.14
add_heatmap-HeatmapAnnotation-method0.440.000.43
add_heatmap-HeatmapList-method1.530.001.54
add_heatmap-dispatch0.020.000.01
adjust_dend_by_leaf_width1.670.071.78
anno_barplot0.200.000.21
anno_boxplot0.240.000.23
anno_density0.370.000.38
anno_histogram0.140.000.14
anno_link2.250.062.31
anno_oncoprint_barplot000
anno_points0.010.000.02
anno_text0.300.020.31
annotation_legend_size-HeatmapList-method000
color_mapping_legend-ColorMapping-method0.190.000.19
columnAnnotation0.010.000.01
column_anno_barplot000
column_anno_boxplot000
column_anno_density000
column_anno_histogram000
column_anno_link0.020.000.02
column_anno_points000
column_anno_text000
column_dend-Heatmap-method0.060.000.06
column_dend-HeatmapList-method0.210.000.20
column_dend-dispatch000
column_order-Heatmap-method0.090.000.10
column_order-HeatmapList-method0.300.000.29
column_order-dispatch000
component_height-Heatmap-method000
component_height-HeatmapList-method000
component_height-dispatch000
component_width-Heatmap-method000
component_width-HeatmapList-method000
component_width-dispatch000
decorate_annotation0.490.000.48
decorate_column_dend000
decorate_column_names000
decorate_column_title000
decorate_dend0.260.000.27
decorate_dimnames0.310.000.31
decorate_heatmap_body0.270.000.26
decorate_row_dend000
decorate_row_names000
decorate_row_title000
decorate_title0.450.000.46
densityHeatmap3.170.003.17
dist20.030.000.03
draw-Heatmap-method0.350.000.34
draw-HeatmapAnnotation-method0.140.000.14
draw-HeatmapList-method1.070.001.08
draw-SingleAnnotation-method0.100.020.11
draw-dispatch0.010.000.02
draw_annotation-Heatmap-method000
draw_annotation_legend-HeatmapList-method000
draw_dend-Heatmap-method000
draw_dimnames-Heatmap-method000
draw_heatmap_body-Heatmap-method000
draw_heatmap_legend-HeatmapList-method000
draw_heatmap_list-HeatmapList-method000
draw_title-Heatmap-method000
draw_title-HeatmapList-method000
draw_title-dispatch000
enhanced_basicplot0.890.000.89
get_color_mapping_list-HeatmapAnnotation-method000
get_color_mapping_param_list-HeatmapAnnotation-method000
grid.dendrogram0.020.000.01
grid.dendrogram20.170.000.17
heatmap_legend_size-HeatmapList-method000
ht_global_opt000
is_abs_unit000
make_column_cluster-Heatmap-method000
make_layout-Heatmap-method000
make_layout-HeatmapList-method000
make_layout-dispatch000
make_row_cluster-Heatmap-method000
map_to_colors-ColorMapping-method0.010.000.02
max_text_height0.020.000.01
max_text_width000
oncoPrint000
packLegend0.780.010.80
plotDataFrame2.670.022.69
prepare-Heatmap-method000
rowAnnotation0.020.000.01
row_anno_barplot000
row_anno_boxplot000
row_anno_density000
row_anno_histogram000
row_anno_link000
row_anno_points000
row_anno_text000
row_dend-Heatmap-method0.100.000.09
row_dend-HeatmapList-method0.310.000.31
row_dend-dispatch000
row_order-Heatmap-method0.090.000.10
row_order-HeatmapList-method0.250.000.25
row_order-dispatch000
selectArea0.020.000.01
set_component_height-Heatmap-method000
show-ColorMapping-method000
show-Heatmap-method0.670.000.67
show-HeatmapAnnotation-method000
show-HeatmapList-method000
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unify_mat_list000

ComplexHeatmap.Rcheck/examples_x64/ComplexHeatmap-Ex.timings

nameusersystemelapsed
AdditiveUnit-class000
AdditiveUnit000
ColorMapping-class0.010.000.02
ColorMapping0.220.020.23
ComplexHeatmap-package000
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Heatmap25.07 0.0125.09
HeatmapAnnotation-class000
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HeatmapList000
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SingleAnnotation-class000
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add.AdditiveUnit4.450.044.48
add_heatmap-Heatmap-method1.110.001.11
add_heatmap-HeatmapAnnotation-method0.750.000.75
add_heatmap-HeatmapList-method1.250.011.27
add_heatmap-dispatch000
adjust_dend_by_leaf_width1.730.081.82
anno_barplot0.140.000.14
anno_boxplot0.250.000.25
anno_density0.440.000.44
anno_histogram0.140.000.14
anno_link2.580.022.60
anno_oncoprint_barplot000
anno_points0.030.000.03
anno_text0.550.000.55
annotation_legend_size-HeatmapList-method000
color_mapping_legend-ColorMapping-method0.210.000.22
columnAnnotation0.020.000.02
column_anno_barplot000
column_anno_boxplot000
column_anno_density000
column_anno_histogram000
column_anno_link000
column_anno_points000
column_anno_text000
column_dend-Heatmap-method0.070.000.08
column_dend-HeatmapList-method0.250.000.25
column_dend-dispatch000
column_order-Heatmap-method0.080.000.08
column_order-HeatmapList-method0.300.000.29
column_order-dispatch000
component_height-Heatmap-method000
component_height-HeatmapList-method000
component_height-dispatch000
component_width-Heatmap-method000
component_width-HeatmapList-method000
component_width-dispatch000
decorate_annotation0.690.000.69
decorate_column_dend000
decorate_column_names000
decorate_column_title000
decorate_dend0.310.000.31
decorate_dimnames0.380.000.38
decorate_heatmap_body0.310.000.31
decorate_row_dend000
decorate_row_names000
decorate_row_title000
decorate_title0.330.000.33
densityHeatmap6.310.006.31
dist20.050.000.05
draw-Heatmap-method0.540.000.55
draw-HeatmapAnnotation-method0.140.000.14
draw-HeatmapList-method1.070.001.06
draw-SingleAnnotation-method0.120.000.13
draw-dispatch000
draw_annotation-Heatmap-method000
draw_annotation_legend-HeatmapList-method000
draw_dend-Heatmap-method000
draw_dimnames-Heatmap-method000
draw_heatmap_body-Heatmap-method000
draw_heatmap_legend-HeatmapList-method000
draw_heatmap_list-HeatmapList-method000
draw_title-Heatmap-method000
draw_title-HeatmapList-method000
draw_title-dispatch0.020.000.01
enhanced_basicplot1.730.001.74
get_color_mapping_list-HeatmapAnnotation-method000
get_color_mapping_param_list-HeatmapAnnotation-method000
grid.dendrogram0.010.000.02
grid.dendrogram20.20.00.2
heatmap_legend_size-HeatmapList-method000
ht_global_opt000
is_abs_unit000
make_column_cluster-Heatmap-method000
make_layout-Heatmap-method000
make_layout-HeatmapList-method000
make_layout-dispatch000
make_row_cluster-Heatmap-method000
map_to_colors-ColorMapping-method0.020.000.01
max_text_height000
max_text_width000
oncoPrint000
packLegend1.020.001.01
plotDataFrame3.730.003.74
prepare-Heatmap-method000
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row_anno_barplot000
row_anno_boxplot000
row_anno_density000
row_anno_histogram000
row_anno_link000
row_anno_points000
row_anno_text000
row_dend-Heatmap-method0.100.000.09
row_dend-HeatmapList-method0.270.000.26
row_dend-dispatch000
row_order-Heatmap-method0.090.000.10
row_order-HeatmapList-method0.250.000.25
row_order-dispatch000
selectArea000
set_component_height-Heatmap-method000
show-ColorMapping-method000
show-Heatmap-method0.970.000.97
show-HeatmapAnnotation-method000
show-HeatmapList-method000
show-SingleAnnotation-method000
show-dispatch000
unify_mat_list000