Zuguang Gu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/ComplexHeatmap |
| Branch: RELEASE_3_6 |
| Last Commit: f647c97 |
| Last Changed Date: 2018-04-10 08:13:37 -0400 (Tue, 10 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:13:27 -0400 (Thu, 12 Apr 2018).
| Package 283/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ComplexHeatmap 1.17.1 Zuguang Gu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ComplexHeatmap |
| Version: 1.17.1 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ComplexHeatmap_1.17.1.tar.gz |
| StartedAt: 2018-04-11 22:29:58 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 22:31:24 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 85.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ComplexHeatmap.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ComplexHeatmap_1.17.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/ComplexHeatmap.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ComplexHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ComplexHeatmap’ version ‘1.17.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ComplexHeatmap’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Heatmap 14.048 0.024 14.1
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.6-bioc/meat/ComplexHeatmap.Rcheck/00check.log’
for details.
ComplexHeatmap.Rcheck/00install.out
* installing *source* package ‘ComplexHeatmap’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ComplexHeatmap)
ComplexHeatmap.Rcheck/tests/test-all.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap)))
>
> test_check("ComplexHeatmap")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 17 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
1.612 0.040 1.653
ComplexHeatmap.Rcheck/ComplexHeatmap-Ex.timings
| name | user | system | elapsed | |
| AdditiveUnit-class | 0.000 | 0.000 | 0.001 | |
| AdditiveUnit | 0 | 0 | 0 | |
| ColorMapping-class | 0 | 0 | 0 | |
| ColorMapping | 0.112 | 0.000 | 0.118 | |
| ComplexHeatmap-package | 0 | 0 | 0 | |
| Heatmap-class | 0.000 | 0.000 | 0.001 | |
| Heatmap | 14.048 | 0.024 | 14.100 | |
| HeatmapAnnotation-class | 0.000 | 0.000 | 0.001 | |
| HeatmapAnnotation | 0.212 | 0.000 | 0.214 | |
| HeatmapList-class | 2.436 | 0.000 | 2.440 | |
| HeatmapList | 0 | 0 | 0 | |
| Legend | 0.232 | 0.004 | 0.237 | |
| SingleAnnotation-class | 0.000 | 0.000 | 0.001 | |
| SingleAnnotation | 0.068 | 0.000 | 0.068 | |
| add.AdditiveUnit | 2.776 | 0.008 | 2.787 | |
| add_heatmap-Heatmap-method | 0.908 | 0.004 | 0.912 | |
| add_heatmap-HeatmapAnnotation-method | 0.4 | 0.0 | 0.4 | |
| add_heatmap-HeatmapList-method | 1.060 | 0.004 | 1.066 | |
| add_heatmap-dispatch | 0 | 0 | 0 | |
| adjust_dend_by_leaf_width | 1.108 | 0.016 | 1.161 | |
| anno_barplot | 0.116 | 0.000 | 0.116 | |
| anno_boxplot | 0.188 | 0.000 | 0.189 | |
| anno_density | 0.292 | 0.004 | 0.293 | |
| anno_histogram | 0.144 | 0.000 | 0.145 | |
| anno_link | 1.400 | 0.036 | 1.438 | |
| anno_oncoprint_barplot | 0 | 0 | 0 | |
| anno_points | 0.016 | 0.004 | 0.021 | |
| anno_text | 0.276 | 0.000 | 0.273 | |
| annotation_legend_size-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| color_mapping_legend-ColorMapping-method | 0.164 | 0.000 | 0.165 | |
| columnAnnotation | 0.016 | 0.000 | 0.013 | |
| column_anno_barplot | 0 | 0 | 0 | |
| column_anno_boxplot | 0 | 0 | 0 | |
| column_anno_density | 0 | 0 | 0 | |
| column_anno_histogram | 0 | 0 | 0 | |
| column_anno_link | 0 | 0 | 0 | |
| column_anno_points | 0 | 0 | 0 | |
| column_anno_text | 0 | 0 | 0 | |
| column_dend-Heatmap-method | 0.060 | 0.000 | 0.063 | |
| column_dend-HeatmapList-method | 0.196 | 0.004 | 0.202 | |
| column_dend-dispatch | 0 | 0 | 0 | |
| column_order-Heatmap-method | 0.064 | 0.000 | 0.064 | |
| column_order-HeatmapList-method | 0.188 | 0.000 | 0.188 | |
| column_order-dispatch | 0 | 0 | 0 | |
| component_height-Heatmap-method | 0 | 0 | 0 | |
| component_height-HeatmapList-method | 0.004 | 0.000 | 0.000 | |
| component_height-dispatch | 0 | 0 | 0 | |
| component_width-Heatmap-method | 0 | 0 | 0 | |
| component_width-HeatmapList-method | 0 | 0 | 0 | |
| component_width-dispatch | 0.004 | 0.000 | 0.000 | |
| decorate_annotation | 0.484 | 0.000 | 0.485 | |
| decorate_column_dend | 0.000 | 0.000 | 0.001 | |
| decorate_column_names | 0.000 | 0.000 | 0.001 | |
| decorate_column_title | 0.004 | 0.000 | 0.000 | |
| decorate_dend | 0.264 | 0.000 | 0.263 | |
| decorate_dimnames | 0.284 | 0.004 | 0.290 | |
| decorate_heatmap_body | 0.228 | 0.008 | 0.239 | |
| decorate_row_dend | 0.000 | 0.000 | 0.001 | |
| decorate_row_names | 0 | 0 | 0 | |
| decorate_row_title | 0 | 0 | 0 | |
| decorate_title | 0.276 | 0.000 | 0.276 | |
| densityHeatmap | 3.212 | 0.008 | 3.225 | |
| dist2 | 0.020 | 0.000 | 0.024 | |
| draw-Heatmap-method | 0.344 | 0.000 | 0.347 | |
| draw-HeatmapAnnotation-method | 0.112 | 0.000 | 0.112 | |
| draw-HeatmapList-method | 0.840 | 0.000 | 0.839 | |
| draw-SingleAnnotation-method | 0.096 | 0.000 | 0.096 | |
| draw-dispatch | 0 | 0 | 0 | |
| draw_annotation-Heatmap-method | 0 | 0 | 0 | |
| draw_annotation_legend-HeatmapList-method | 0 | 0 | 0 | |
| draw_dend-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_dimnames-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_heatmap_body-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_heatmap_legend-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_heatmap_list-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_title-Heatmap-method | 0 | 0 | 0 | |
| draw_title-HeatmapList-method | 0.004 | 0.000 | 0.000 | |
| draw_title-dispatch | 0 | 0 | 0 | |
| enhanced_basicplot | 1.076 | 0.000 | 1.077 | |
| get_color_mapping_list-HeatmapAnnotation-method | 0 | 0 | 0 | |
| get_color_mapping_param_list-HeatmapAnnotation-method | 0.000 | 0.000 | 0.001 | |
| grid.dendrogram | 0.012 | 0.000 | 0.014 | |
| grid.dendrogram2 | 0.152 | 0.000 | 0.153 | |
| heatmap_legend_size-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| ht_global_opt | 0.000 | 0.000 | 0.001 | |
| is_abs_unit | 0.004 | 0.000 | 0.002 | |
| make_column_cluster-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| make_layout-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| make_layout-HeatmapList-method | 0.004 | 0.000 | 0.001 | |
| make_layout-dispatch | 0.000 | 0.000 | 0.001 | |
| make_row_cluster-Heatmap-method | 0 | 0 | 0 | |
| map_to_colors-ColorMapping-method | 0.016 | 0.000 | 0.016 | |
| max_text_height | 0.000 | 0.000 | 0.001 | |
| max_text_width | 0.004 | 0.000 | 0.002 | |
| oncoPrint | 0 | 0 | 0 | |
| packLegend | 0.780 | 0.000 | 0.779 | |
| plotDataFrame | 2.760 | 0.000 | 2.759 | |
| prepare-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| rowAnnotation | 0.016 | 0.000 | 0.017 | |
| row_anno_barplot | 0 | 0 | 0 | |
| row_anno_boxplot | 0 | 0 | 0 | |
| row_anno_density | 0 | 0 | 0 | |
| row_anno_histogram | 0 | 0 | 0 | |
| row_anno_link | 0 | 0 | 0 | |
| row_anno_points | 0 | 0 | 0 | |
| row_anno_text | 0 | 0 | 0 | |
| row_dend-Heatmap-method | 0.064 | 0.000 | 0.064 | |
| row_dend-HeatmapList-method | 0.204 | 0.000 | 0.205 | |
| row_dend-dispatch | 0 | 0 | 0 | |
| row_order-Heatmap-method | 0.064 | 0.000 | 0.064 | |
| row_order-HeatmapList-method | 0.192 | 0.000 | 0.194 | |
| row_order-dispatch | 0 | 0 | 0 | |
| selectArea | 0 | 0 | 0 | |
| set_component_height-Heatmap-method | 0 | 0 | 0 | |
| show-ColorMapping-method | 0 | 0 | 0 | |
| show-Heatmap-method | 0.644 | 0.004 | 0.647 | |
| show-HeatmapAnnotation-method | 0 | 0 | 0 | |
| show-HeatmapList-method | 0 | 0 | 0 | |
| show-SingleAnnotation-method | 0 | 0 | 0 | |
| show-dispatch | 0.000 | 0.000 | 0.001 | |
| unify_mat_list | 0.000 | 0.000 | 0.001 | |