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BioC 3.6: INSTALL report for mgsa on veracruz1

This page was generated on 2017-08-16 13:41:25 -0400 (Wed, 16 Aug 2017).

Package 825/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mgsa 1.25.1
Sebastian Bauer
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mgsa
Last Changed Rev: 129635 / Revision: 131943
Last Changed Date: 2017-05-16 16:11:49 -0400 (Tue, 16 May 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mgsa
Version: 1.25.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL mgsa
StartedAt: 2017-08-15 18:06:58 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:07:06 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 7.3 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL mgsa
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’
* installing *source* package ‘mgsa’ ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  -I. -fopenmp -fPIC  -Wall -g -O2  -c mgsa-core.c -o mgsa-core.o
mgsa-core.c:796:13: warning: unused function 'print_context' [-Wunused-function]
static void print_context(struct context *cn)
            ^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  -I. -fopenmp -fPIC  -Wall -g -O2  -c mgsa.c -o mgsa.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  -I. -fopenmp -fPIC  -Wall -g -O2  -c mt.c -o mt.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mgsa.so mgsa-core.o mgsa.o mt.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/mgsa/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mgsa)