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BioC 3.5: CHECK report for supraHex on tokay2

This page was generated on 2017-10-18 14:22:50 -0400 (Wed, 18 Oct 2017).

Package 1287/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.14.0
Hai Fang
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/supraHex
Branch: RELEASE_3_5
Last Commit: 6fba9e1
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: supraHex
Version: 1.14.0
Command: rm -rf supraHex.buildbin-libdir supraHex.Rcheck && mkdir supraHex.buildbin-libdir supraHex.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=supraHex.buildbin-libdir supraHex_1.14.0.tar.gz >supraHex.Rcheck\00install.out 2>&1 && cp supraHex.Rcheck\00install.out supraHex-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=supraHex.buildbin-libdir --install="check:supraHex-install.out" --force-multiarch --no-vignettes --timings supraHex_1.14.0.tar.gz
StartedAt: 2017-10-18 03:18:33 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 03:20:01 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 88.9 seconds
RetCode: 0
Status:  OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf supraHex.buildbin-libdir supraHex.Rcheck && mkdir supraHex.buildbin-libdir supraHex.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=supraHex.buildbin-libdir supraHex_1.14.0.tar.gz >supraHex.Rcheck\00install.out 2>&1 && cp supraHex.Rcheck\00install.out supraHex-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=supraHex.buildbin-libdir --install="check:supraHex-install.out" --force-multiarch --no-vignettes --timings supraHex_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/supraHex.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'supraHex/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'supraHex' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'supraHex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

supraHex.Rcheck/00install.out:


install for i386

* installing *source* package 'supraHex' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'supraHex' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'supraHex' as supraHex_1.14.0.zip
* DONE (supraHex)

supraHex.Rcheck/examples_i386/supraHex-Ex.timings:

nameusersystemelapsed
sBMH0.250.000.25
sCompReorder1.000.031.03
sDistance0.080.000.07
sDmat0.110.000.11
sDmatCluster0.230.000.24
sDmatMinima0.160.000.15
sHexDist000
sHexGrid000
sHexGridVariant0.010.000.02
sHexPolygon000
sInitial000
sMapOverlay0.350.000.34
sNeighAny000
sNeighDirect000
sPipeline1.120.011.14
sTopology0.030.000.04
sTrainBatch0.050.000.04
sTrainSeq0.260.000.27
sTrainology000
sWriteData0.220.000.22
visColoralpha0.020.000.01
visColorbar0.010.000.02
visColormap000
visCompReorder0.940.081.02
visDmatCluster0.280.050.33
visDmatHeatmap0.20.00.2
visHeatmap0.080.000.08
visHeatmapAdv0.830.000.83
visHexAnimate0.010.000.01
visHexBarplot0.610.050.66
visHexComp0.100.000.09
visHexGrid0.080.000.08
visHexMapping1.140.071.22
visHexMulComp0.770.070.82
visHexPattern1.840.202.05
visKernels0.020.020.06
visTreeBSclust0.900.030.94
visTreeBootstrap0.630.000.63
visVp0.030.000.03

supraHex.Rcheck/examples_x64/supraHex-Ex.timings:

nameusersystemelapsed
sBMH0.340.010.36
sCompReorder1.390.001.39
sDistance0.060.020.08
sDmat0.100.000.09
sDmatCluster0.280.000.28
sDmatMinima0.120.000.13
sHexDist000
sHexGrid000
sHexGridVariant0.020.000.01
sHexPolygon000
sInitial000
sMapOverlay0.640.040.67
sNeighAny0.010.000.02
sNeighDirect000
sPipeline1.690.031.72
sTopology0.020.010.03
sTrainBatch0.090.000.09
sTrainSeq0.30.00.3
sTrainology0.010.000.02
sWriteData0.250.000.26
visColoralpha000
visColorbar0.050.000.04
visColormap0.010.000.02
visCompReorder1.670.071.73
visDmatCluster0.410.070.49
visDmatHeatmap0.170.000.17
visHeatmap0.100.000.09
visHeatmapAdv1.040.001.05
visHexAnimate000
visHexBarplot0.720.050.76
visHexComp0.090.000.10
visHexGrid0.090.000.09
visHexMapping1.080.061.14
visHexMulComp0.960.051.00
visHexPattern1.890.172.06
visKernels0.010.030.05
visTreeBSclust1.050.001.09
visTreeBootstrap0.810.000.82
visVp0.020.020.03