BioC 3.5: CHECK report for supraHex on malbec2

Package: supraHex

Version: 1.14.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz

StartedAt: 2017-10-18 02:46:47 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 02:47:31 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 43.6 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/supraHex.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.252	0.000	0.250
sCompReorder	1.052	0.004	1.055
sDistance	0.076	0.004	0.081
sDmat	0.092	0.000	0.092
sDmatCluster	0.188	0.000	0.191
sDmatMinima	0.116	0.000	0.113
sHexDist	0.004	0.000	0.003
sHexGrid	0.000	0.000	0.002
sHexGridVariant	0.004	0.000	0.003
sHexPolygon	0.000	0.000	0.002
sInitial	0.004	0.000	0.002
sMapOverlay	0.404	0.004	0.409
sNeighAny	0.004	0.000	0.004
sNeighDirect	0.004	0.000	0.003
sPipeline	1.176	0.008	1.184
sTopology	0.008	0.004	0.013
sTrainBatch	0.028	0.000	0.028
sTrainSeq	0.268	0.000	0.270
sTrainology	0.004	0.000	0.002
sWriteData	0.224	0.000	0.225
visColoralpha	0.004	0.000	0.004
visColorbar	0.028	0.000	0.030
visColormap	0.004	0.000	0.004
visCompReorder	0.900	0.008	0.912
visDmatCluster	0.220	0.004	0.223
visDmatHeatmap	0.140	0.000	0.142
visHeatmap	0.072	0.000	0.073
visHeatmapAdv	0.884	0.000	0.885
visHexAnimate	0.004	0.000	0.002
visHexBarplot	0.652	0.012	0.666
visHexComp	0.084	0.000	0.081
visHexGrid	0.120	0.004	0.124
visHexMapping	0.980	0.012	0.991
visHexMulComp	0.624	0.012	0.637
visHexPattern	1.552	0.016	1.569
visKernels	0.008	0.000	0.009
visTreeBSclust	0.824	0.000	0.825
visTreeBootstrap	0.688	0.004	0.690
visVp	0.016	0.004	0.022