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BioC 3.3: BUILD report for sevenbridges on moscato2

This page was generated on 2016-10-13 12:54:21 -0700 (Thu, 13 Oct 2016).

Package 1061/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sevenbridges 1.2.8
Tengfei Yin
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/sevenbridges
Last Changed Rev: 120874 / Revision: 122332
Last Changed Date: 2016-09-12 08:33:00 -0700 (Mon, 12 Sep 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sevenbridges
Version: 1.2.8
Command: chmod a+r sevenbridges -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sevenbridges
StartedAt: 2016-10-12 23:38:13 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 23:40:44 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 151.2 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r sevenbridges -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sevenbridges
###
##############################################################################
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* checking for file 'sevenbridges/DESCRIPTION' ... OK
* preparing 'sevenbridges':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR

Attaching package: 'sevenbridges'

The following object is masked from 'package:BiocStyle':

    output

Quitting from lines 738-758 (apps.Rmd) 
Error: processing vignette 'apps.Rmd' failed with diagnostics:
lexical error: invalid bytes in UTF8 string.
          "Tag name to be used as exonsÂ’ transcript-parents.",        
                     (right here) ------^
Execution halted