To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sevenbridges")

In most cases, you don't need to download the package archive at all.

sevenbridges

 

   

R Client for Seven Bridges Platform API and CWL Tool builder in R

Bioconductor version: Release (3.3)

R client and utilities for Seven Bridges platform API, from cancer genomics cloud to other Seven Bridges supported platforms.

Author: Tengfei Yin <tengfei.yin at sbgenomics.com>, Dusan Randjelovic <dusan.randjelovic at sbgenomics.com>, Nan Xiao <road2stat at gmail.com>

Maintainer: Tengfei Yin <tengfei.yin at sbgenomics.com>

Citation (from within R, enter citation("sevenbridges")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sevenbridges")

Documentation

HTML R Script Complete Guide for API R Client
HTML R Script Creating Your Docker Container and Command Line Interface (with docopt)
HTML R Script Describe CWL Tools/Workflows and Execution
HTML R Script Find Data on CGC via Data Exploerer, SPARQL and Data API
HTML R Script IDE container: Rstudio and Shiny server and more
HTML R Script Master Tutorial: use R for Cancer Genomics Cloud
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Software, ThirdPartyClient
Version 1.2.8
In Bioconductor since BioC 3.3 (R-3.3) (< 6 months)
License Apache License 2.0
Depends methods, utils, stats
Imports httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, liftr, rstudioapi, uuid, dplyr
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, readr, clipr
SystemRequirements
Enhances
URL https://www.sevenbridges.com
BugReports https://github.com/sbg/sevenbridges-r/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source sevenbridges_1.2.8.tar.gz
Windows Binary sevenbridges_1.1.17.zip
Mac OS X 10.9 (Mavericks) sevenbridges_1.2.8.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/sevenbridges/tree/release-3.3
Package Short Url http://bioconductor.org/packages/sevenbridges/
Package Downloads Report Download Stats

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