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BioC 3.2: BUILD BIN report for DESeq on oaxaca

This page was generated on 2016-04-23 10:24:33 -0700 (Sat, 23 Apr 2016).

Package 268/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq 1.22.1
Simon Anders
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/DESeq
Last Changed Rev: 112514 / Revision: 116712
Last Changed Date: 2016-01-13 08:32:41 -0800 (Wed, 13 Jan 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: DESeq
Version: 1.22.1
Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq_1.22.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DESeq.buildbin-libdir
StartedAt: 2016-04-23 05:37:23 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:37:37 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 14.2 seconds
RetCode: 0
Status:  OK 
PackageFile: DESeq_1.22.1.tgz
PackageFileSize: 2.073 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq_1.22.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DESeq.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DESeq.buildbin-libdir DESeq_1.22.1.tar.gz'
>>>>>>> 

* installing *source* package ‘DESeq’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c pval.c -o pval.o
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
   double esttotalperlength = total/2;
          ^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DESeq.so pval.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/DESeq.buildbin-libdir/DESeq/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DESeq.buildbin-libdir/DESeq/libs//DESeq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"