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BioC 3.2: INSTALL report for DESeq on moscato1

This page was generated on 2016-04-23 10:17:06 -0700 (Sat, 23 Apr 2016).

Package 268/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq 1.22.1
Simon Anders
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/DESeq
Last Changed Rev: 112514 / Revision: 116712
Last Changed Date: 2016-01-13 08:32:41 -0800 (Wed, 13 Jan 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DESeq
Version: 1.22.1
Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/DESeq_1.22.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq.buildbin-libdir --merge-multiarch DESeq_1.22.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL DESeq_1.22.1.zip && rm DESeq_1.22.1.tar.gz DESeq_1.22.1.zip
StartedAt: 2016-04-22 17:59:31 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 18:01:27 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 115.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/DESeq_1.22.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq.buildbin-libdir --merge-multiarch DESeq_1.22.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL DESeq_1.22.1.zip  && rm DESeq_1.22.1.tar.gz DESeq_1.22.1.zip
###
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##############################################################################


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install for i386

* installing *source* package 'DESeq' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
gcc -m32 -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DESeq' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
gcc -m64 -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DESeq' as DESeq_1.22.1.zip
* DONE (DESeq)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'DESeq' successfully unpacked and MD5 sums checked