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This page was generated on 2024-03-28 14:52:06 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 375/429HostnameOS / ArchINSTALLBUILDCHECK
SomatiCAData 1.40.0  (landing page)
Mengjie Chen
Snapshot Date: 2024-03-28 07:30:02 -0400 (Thu, 28 Mar 2024)
git_url: https://git.bioconductor.org/packages/SomatiCAData
git_branch: RELEASE_3_18
git_last_commit: cee61d4
git_last_commit_date: 2023-10-24 09:04:49 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for SomatiCAData on nebbiolo2


To the developers/maintainers of the SomatiCAData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SomatiCAData
Version: 1.40.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:SomatiCAData.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings SomatiCAData_1.40.0.tar.gz
StartedAt: 2024-03-28 12:11:30 -0400 (Thu, 28 Mar 2024)
EndedAt: 2024-03-28 12:13:28 -0400 (Thu, 28 Mar 2024)
EllapsedTime: 117.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: SomatiCAData.Rcheck
Warnings: 2

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:SomatiCAData.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings SomatiCAData_1.40.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/SomatiCAData.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘SomatiCAData/DESCRIPTION’ ... OK
* this is package ‘SomatiCAData’ version ‘1.40.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SomatiCAData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 32.2Mb
  sub-directories of 1Mb or more:
    data  32.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 32.1 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
           old_size new_size compress
  glio.rda   32.4Mb   18.9Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-data-experiment/meat/SomatiCAData.Rcheck/00check.log’
for details.



Installation output

SomatiCAData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL SomatiCAData
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘SomatiCAData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SomatiCAData)

Tests output


Example timings

SomatiCAData.Rcheck/SomatiCAData-Ex.timings

nameusersystemelapsed
SomatiCAData-package0.0110.0000.011