| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-03-29 11:37:28 -0400 (Fri, 29 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2265/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| zlibbioc 1.48.2 (landing page) Bioconductor Package Maintainer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the zlibbioc package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/zlibbioc.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: zlibbioc |
| Version: 1.48.2 |
| Command: rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=zlibbioc.buildbin-libdir zlibbioc_1.48.2.tar.gz |
| StartedAt: 2024-03-28 07:55:16 -0400 (Thu, 28 Mar 2024) |
| EndedAt: 2024-03-28 07:55:28 -0400 (Thu, 28 Mar 2024) |
| EllapsedTime: 11.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: zlibbioc_1.48.2.zip |
| PackageFileSize: 368.3 KiB |
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### Running command:
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### rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=zlibbioc.buildbin-libdir zlibbioc_1.48.2.tar.gz
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* installing *source* package 'zlibbioc' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
mkdir -p "F:/biocbuild/bbs-3.18-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" "F:/biocbuild/bbs-3.18-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/x64"
make -C zlib-1.2.5 -f"F:/biocbuild/bbs-3.18-bioc/R/etc/x64/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory '/f/biocbuild/bbs-3.18-bioc/tmpdir/RtmpeOS1xl/R.INSTALL1d58c10af4c7e/zlibbioc/src/zlib-1.2.5'
win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o'
F:/biocbuild/bbs-3.18-bioc/R/etc/x64/Makeconf:265: warning: ignoring old recipe for target '.c.o'
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o
strip zlib1bioc.dll
make[1]: Leaving directory '/f/biocbuild/bbs-3.18-bioc/tmpdir/RtmpeOS1xl/R.INSTALL1d58c10af4c7e/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
"F:/biocbuild/bbs-3.18-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/x64"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "F:/biocbuild/bbs-3.18-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include"
gcc -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_zlibbioc.c -o R_init_zlibbioc.o
gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.48.2.zip
* DONE (zlibbioc)