Gabriele Sales
| Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/spatialDE |
| git_branch: RELEASE_3_18 |
| git_last_commit: 2f7926f |
| git_last_commit_date: 2024-02-08 03:11:42 -0400 (Thu, 08 Feb 2024) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-04-17 11:36:24 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2009/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| spatialDE 1.8.1 (landing page) Gabriele Sales
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the spatialDE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialDE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: spatialDE |
| Version: 1.8.1 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings spatialDE_1.8.1.tar.gz |
| StartedAt: 2024-04-16 04:13:02 -0400 (Tue, 16 Apr 2024) |
| EndedAt: 2024-04-16 04:21:50 -0400 (Tue, 16 Apr 2024) |
| EllapsedTime: 527.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: spatialDE.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings spatialDE_1.8.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/spatialDE.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘spatialDE/DESCRIPTION’ ... OK
* this is package ‘spatialDE’ version ‘1.8.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘spatialDE’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/home/biocbuild/bbs-3.18-bioc/meat/spatialDE.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
spatial_patterns 57.662 1.519 57.282
FSV_sig 6.036 1.022 6.654
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘spatialDE.Rmd’ using ‘UTF-8’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.18-bioc/meat/spatialDE.Rcheck/00check.log’
for details.
spatialDE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL spatialDE ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘spatialDE’ ... ** using non-staged installation via StagedInstall field ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (spatialDE)
spatialDE.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(spatialDE)
>
> test_check("spatialDE")
Loading required package: SingleCellExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
rowMedians
The following objects are masked from 'package:matrixStats':
anyMissing, rowMedians
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
42%|████▏ | 42/100 [00:00<00:00, 419.89it/s][A
84%|████████▍ | 84/100 [00:00<00:00, 409.76it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 4.07it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 312.30it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 302.16it/s][A
98%|█████████▊| 98/100 [00:00<00:00, 318.34it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:02, 3.44it/s]
0%| | 0/100 [00:00<?, ?it/s][A
30%|███ | 30/100 [00:00<00:00, 294.88it/s][A
60%|██████ | 60/100 [00:00<00:00, 281.30it/s][A
90%|█████████ | 90/100 [00:00<00:00, 285.68it/s][A
[A
Models: 30%|███ | 3/10 [00:00<00:02, 3.12it/s]
0%| | 0/100 [00:00<?, ?it/s][A
29%|██▉ | 29/100 [00:00<00:00, 285.67it/s][A
58%|█████▊ | 58/100 [00:00<00:00, 270.90it/s][A
86%|████████▌ | 86/100 [00:00<00:00, 274.57it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:02, 2.95it/s]
0%| | 0/100 [00:00<?, ?it/s][A
29%|██▉ | 29/100 [00:00<00:00, 284.01it/s][A
58%|█████▊ | 58/100 [00:00<00:00, 275.31it/s][A
86%|████████▌ | 86/100 [00:00<00:00, 271.90it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 2.86it/s]
0%| | 0/100 [00:00<?, ?it/s][A
29%|██▉ | 29/100 [00:00<00:00, 282.13it/s][A
58%|█████▊ | 58/100 [00:00<00:00, 273.93it/s][A
86%|████████▌ | 86/100 [00:00<00:00, 276.11it/s][A
[A
Models: 60%|██████ | 6/10 [00:02<00:01, 2.82it/s]
0%| | 0/100 [00:00<?, ?it/s][A
30%|███ | 30/100 [00:00<00:00, 290.54it/s][A
60%|██████ | 60/100 [00:00<00:00, 286.26it/s][A
89%|████████▉ | 89/100 [00:00<00:00, 287.89it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.83it/s]
0%| | 0/100 [00:00<?, ?it/s][A
30%|███ | 30/100 [00:00<00:00, 297.99it/s][A
60%|██████ | 60/100 [00:00<00:00, 278.60it/s][A
89%|████████▉ | 89/100 [00:00<00:00, 281.81it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 2.82it/s]
0%| | 0/100 [00:00<?, ?it/s][A
19%|█▉ | 19/100 [00:00<00:00, 188.05it/s][A
49%|████▉ | 49/100 [00:00<00:00, 251.38it/s][A
79%|███████▉ | 79/100 [00:00<00:00, 273.23it/s][A
[A
Models: 90%|█████████ | 9/10 [00:03<00:00, 2.76it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 319.19it/s][A
65%|██████▌ | 65/100 [00:00<00:00, 317.64it/s][A
97%|█████████▋| 97/100 [00:00<00:00, 317.39it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 2.87it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 2.91it/s]
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
45%|████▌ | 45/100 [00:00<00:00, 441.84it/s][A
90%|█████████ | 90/100 [00:00<00:00, 430.68it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 4.26it/s]
0%| | 0/100 [00:00<?, ?it/s][A
35%|███▌ | 35/100 [00:00<00:00, 347.62it/s][A
70%|███████ | 70/100 [00:00<00:00, 321.77it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:02, 3.54it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 329.01it/s][A
67%|██████▋ | 67/100 [00:00<00:00, 299.22it/s][A
98%|█████████▊| 98/100 [00:00<00:00, 290.40it/s][A
[A
Models: 30%|███ | 3/10 [00:00<00:02, 3.23it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 319.11it/s][A
65%|██████▌ | 65/100 [00:00<00:00, 293.64it/s][A
95%|█████████▌| 95/100 [00:00<00:00, 291.89it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:01, 3.10it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 316.85it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 291.70it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 282.29it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 3.01it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 320.04it/s][A
66%|██████▌ | 66/100 [00:00<00:00, 294.35it/s][A
96%|█████████▌| 96/100 [00:00<00:00, 286.79it/s][A
[A
Models: 60%|██████ | 6/10 [00:01<00:01, 2.96it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 315.04it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 291.27it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 288.35it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.94it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 315.78it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 294.71it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 291.51it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 2.94it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 317.72it/s][A
65%|██████▌ | 65/100 [00:00<00:00, 302.63it/s][A
96%|█████████▌| 96/100 [00:00<00:00, 304.40it/s][A
[A
Models: 90%|█████████ | 9/10 [00:02<00:00, 2.97it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 332.79it/s][A
68%|██████▊ | 68/100 [00:00<00:00, 319.12it/s][A
100%|██████████| 100/100 [00:00<00:00, 319.11it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 3.03it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 3.06it/s]
/home/biocbuild/.cache/R/basilisk/1.14.3/spatialDE/1.8.1/env/lib/python3.9/site-packages/pandas/core/internals/blocks.py:351: RuntimeWarning: invalid value encountered in log
result = func(self.values, **kwargs)
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
43%|████▎ | 43/100 [00:00<00:00, 417.86it/s][A
89%|████████▉ | 89/100 [00:00<00:00, 441.34it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 4.34it/s]
0%| | 0/100 [00:00<?, ?it/s][A
36%|███▌ | 36/100 [00:00<00:00, 348.18it/s][A
71%|███████ | 71/100 [00:00<00:00, 328.76it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:02, 3.63it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 322.58it/s][A
66%|██████▌ | 66/100 [00:00<00:00, 307.43it/s][A
97%|█████████▋| 97/100 [00:00<00:00, 300.78it/s][A
[A
Models: 30%|███ | 3/10 [00:00<00:02, 3.32it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 305.88it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 239.66it/s][A
91%|█████████ | 91/100 [00:00<00:00, 257.34it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:02, 2.99it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 307.30it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 291.96it/s][A
92%|█████████▏| 92/100 [00:00<00:00, 289.22it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 2.96it/s]
0%| | 0/100 [00:00<?, ?it/s][A
29%|██▉ | 29/100 [00:00<00:00, 287.61it/s][A
58%|█████▊ | 58/100 [00:00<00:00, 280.62it/s][A
87%|████████▋ | 87/100 [00:00<00:00, 281.14it/s][A
[A
Models: 60%|██████ | 6/10 [00:01<00:01, 2.90it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 308.06it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 296.41it/s][A
92%|█████████▏| 92/100 [00:00<00:00, 291.20it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.91it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 314.94it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 299.15it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 298.73it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 2.93it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 330.93it/s][A
68%|██████▊ | 68/100 [00:00<00:00, 308.23it/s][A
99%|█████████▉| 99/100 [00:00<00:00, 305.17it/s][A
[A
Models: 90%|█████████ | 9/10 [00:02<00:00, 2.97it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 330.00it/s][A
67%|██████▋ | 67/100 [00:00<00:00, 328.27it/s][A
100%|██████████| 100/100 [00:00<00:00, 322.66it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 3.04it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 3.06it/s]
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
42%|████▏ | 42/100 [00:00<00:00, 412.03it/s][A
88%|████████▊ | 88/100 [00:00<00:00, 437.16it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 4.29it/s]
0%| | 0/100 [00:00<?, ?it/s][A
36%|███▌ | 36/100 [00:00<00:00, 355.20it/s][A
72%|███████▏ | 72/100 [00:00<00:00, 335.21it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:02, 3.64it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 327.24it/s][A
66%|██████▌ | 66/100 [00:00<00:00, 307.10it/s][A
97%|█████████▋| 97/100 [00:00<00:00, 303.51it/s][A
[A
Models: 30%|███ | 3/10 [00:00<00:02, 3.34it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 311.07it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 292.17it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 291.32it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:01, 3.15it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 307.16it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 289.16it/s][A
91%|█████████ | 91/100 [00:00<00:00, 288.66it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 3.05it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 308.01it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 291.63it/s][A
92%|█████████▏| 92/100 [00:00<00:00, 288.29it/s][A
[A
Models: 60%|██████ | 6/10 [00:01<00:01, 2.99it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 309.03it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 300.39it/s][A
93%|█████████▎| 93/100 [00:00<00:00, 294.77it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.98it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 316.16it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 300.69it/s][A
95%|█████████▌| 95/100 [00:00<00:00, 297.34it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 2.98it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 333.84it/s][A
68%|██████▊ | 68/100 [00:00<00:00, 311.48it/s][A
100%|██████████| 100/100 [00:00<00:00, 307.78it/s][A
[A
Models: 90%|█████████ | 9/10 [00:02<00:00, 3.01it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 336.30it/s][A
68%|██████▊ | 68/100 [00:00<00:00, 330.68it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 3.08it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 3.11it/s]
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
42%|████▏ | 42/100 [00:00<00:00, 418.63it/s][A
88%|████████▊ | 88/100 [00:00<00:00, 442.72it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 4.34it/s]
0%| | 0/100 [00:00<?, ?it/s][A
36%|███▌ | 36/100 [00:00<00:00, 356.07it/s][A
72%|███████▏ | 72/100 [00:00<00:00, 333.40it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:02, 3.65it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 324.15it/s][A
66%|██████▌ | 66/100 [00:00<00:00, 308.67it/s][A
97%|█████████▋| 97/100 [00:00<00:00, 306.60it/s][A
[A
Models: 30%|███ | 3/10 [00:00<00:02, 3.35it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 317.28it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 297.63it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 294.77it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:01, 3.18it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 305.40it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 290.79it/s][A
92%|█████████▏| 92/100 [00:00<00:00, 289.27it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 3.07it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 309.36it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 290.95it/s][A
92%|█████████▏| 92/100 [00:00<00:00, 287.34it/s][A
[A
Models: 60%|██████ | 6/10 [00:01<00:01, 3.01it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 313.62it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 304.00it/s][A
95%|█████████▌| 95/100 [00:00<00:00, 298.31it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 3.00it/s]
0%| | 0/100 [00:00<?, ?it/s][A
32%|███▏ | 32/100 [00:00<00:00, 314.62it/s][A
64%|██████▍ | 64/100 [00:00<00:00, 298.53it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 299.01it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 2.99it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 333.45it/s][A
68%|██████▊ | 68/100 [00:00<00:00, 314.37it/s][A
100%|██████████| 100/100 [00:00<00:00, 312.71it/s][A
[A
Models: 90%|█████████ | 9/10 [00:02<00:00, 3.03it/s]
0%| | 0/100 [00:00<?, ?it/s][A
35%|███▌ | 35/100 [00:00<00:00, 339.14it/s][A
69%|██████▉ | 69/100 [00:00<00:00, 335.60it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 3.09it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 3.13it/s]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
>
> proc.time()
user system elapsed
49.462 7.253 48.815
spatialDE.Rcheck/spatialDE-Ex.timings
| name | user | system | elapsed | |
| FSV_sig | 6.036 | 1.022 | 6.654 | |
| mockSVG | 0.277 | 0.028 | 0.304 | |
| modelSearch | 3.276 | 0.324 | 3.235 | |
| model_search | 3.028 | 0.428 | 3.005 | |
| multiGenePlots | 2.365 | 0.351 | 2.360 | |
| regress_out | 0.122 | 0.004 | 0.126 | |
| run | 1.501 | 0.097 | 1.469 | |
| spatialDE | 1.736 | 0.244 | 1.703 | |
| spatialPatterns | 1.532 | 0.850 | 1.331 | |
| spatial_patterns | 57.662 | 1.519 | 57.282 | |
| stabilize | 0.102 | 0.016 | 0.118 | |