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This page was generated on 2023-12-05 11:36:13 -0500 (Tue, 05 Dec 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4688
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4421
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4440
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1882/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scMET 1.4.0  (landing page)
Andreas C. Kapourani
Snapshot Date: 2023-12-04 14:05:07 -0500 (Mon, 04 Dec 2023)
git_url: https://git.bioconductor.org/packages/scMET
git_branch: RELEASE_3_18
git_last_commit: d18b5a2
git_last_commit_date: 2023-10-24 11:43:15 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

CHECK results for scMET on nebbiolo2


To the developers/maintainers of the scMET package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scMET.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: scMET
Version: 1.4.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:scMET.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings scMET_1.4.0.tar.gz
StartedAt: 2023-12-05 01:31:35 -0500 (Tue, 05 Dec 2023)
EndedAt: 2023-12-05 01:36:29 -0500 (Tue, 05 Dec 2023)
EllapsedTime: 293.3 seconds
RetCode: 0
Status:   OK  
CheckDir: scMET.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:scMET.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings scMET_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/scMET.Rcheck’
* using R version 4.3.2 Patched (2023-11-13 r85521)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘scMET/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘scMET’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scMET’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking C++ specification ... OK
  Not all R platforms support C++17
* checking installed package size ... NOTE
  installed size is 47.4Mb
  sub-directories of 1Mb or more:
    libs  46.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
scmet_plot_estimated_vs_true 19.092  0.280  19.357
scmet                        15.133  0.340  15.465
scmet_plot_efdr_efnr_grid    13.136  0.187  13.315
scmet_hvf_lvf                12.919  0.217  13.127
scmet_plot_mean_var          12.687  0.132  12.810
scmet_plot_vf_tail_prob      11.943  0.080  12.015
sce_to_scmet                  6.810  0.295   7.106
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘scMET_vignette.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/scMET.Rcheck/00check.log’
for details.



Installation output

scMET.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL scMET
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘scMET’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++17


g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:397,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
   60 | template<> struct is_arithmetic<__m128>  { enum { value = true }; };
      |                                       ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
   62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  161 | template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
      |                                           ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  162 | template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
      |                                           ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
  163 | template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
      |                                           ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  718 | struct palign_impl<Offset,Packet4f>
      |                                   ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
  741 | struct palign_impl<Offset,Packet4i>
      |                                   ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  764 | struct palign_impl<Offset,Packet2d>
      |                                   ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  778 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
      |                                  ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  783 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
      |                                  ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
  790 | ptranspose(PacketBlock<Packet4i,4>& kernel) {
      |                                  ^
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:377,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   15 |   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
      |                                                                      ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   22 |   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
      |                                                                      ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   15 |   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
      |                                                                      ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   22 |   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
      |                                                                      ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:29,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<int, -1>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]


g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -Wall -c stanExports_scmet.cc -o stanExports_scmet.o
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:397,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
   60 | template<> struct is_arithmetic<__m128>  { enum { value = true }; };
      |                                       ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
   62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  161 | template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
      |                                           ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  162 | template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
      |                                           ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
  163 | template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
      |                                           ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  718 | struct palign_impl<Offset,Packet4f>
      |                                   ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
  741 | struct palign_impl<Offset,Packet4i>
      |                                   ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  764 | struct palign_impl<Offset,Packet2d>
      |                                   ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  778 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
      |                                  ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  783 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
      |                                  ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
  790 | ptranspose(PacketBlock<Packet4i,4>& kernel) {
      |                                  ^
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:377,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   15 |   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
      |                                                                      ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   22 |   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
      |                                                                      ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   15 |   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
      |                                                                      ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   22 |   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
      |                                                                      ^
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/11/bits/locale_conv.h:41,
                 from /usr/include/c++/11/locale:43,
                 from /usr/include/c++/11/iomanip:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_scmet.cc:3:
/usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/11/bits/locale_conv.h:41,
                 from /usr/include/c++/11/locale:43,
                 from /usr/include/c++/11/iomanip:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_scmet.cc:3:
/usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/11/bits/locale_conv.h:41,
                 from /usr/include/c++/11/locale:43,
                 from /usr/include/c++/11/iomanip:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_scmet.cc:3:
/usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/11/bits/locale_conv.h:41,
                 from /usr/include/c++/11/locale:43,
                 from /usr/include/c++/11/iomanip:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_scmet.cc:3:
/usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/11/bits/locale_conv.h:41,
                 from /usr/include/c++/11/locale:43,
                 from /usr/include/c++/11/iomanip:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_scmet.cc:3:
/usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/11/bits/locale_conv.h:41,
                 from /usr/include/c++/11/locale:43,
                 from /usr/include/c++/11/iomanip:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_scmet.cc:3:
/usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/11/bits/locale_conv.h:41,
                 from /usr/include/c++/11/locale:43,
                 from /usr/include/c++/11/iomanip:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_scmet.cc:3:
/usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/lexical_cast.hpp:30,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/callbacks/writer.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/filtered_values.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:23,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp: At global scope:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<int, -1>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:55:39:   required from ‘class Eigen::LDLT<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:55:39:   required from ‘class Eigen::LDLT<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:281:19:   required from ‘class Eigen::LDLT<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:29:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:41:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:45:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, 1, true, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply_lower_tri_self_transpose.hpp:36:26:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply_lower_tri_self_transpose.hpp:36:34:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:110,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:14,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp: In function ‘Eigen::Matrix<typename stan::value_type<T>::type, EigMat::ColsAtCompileTime, EigMat::RowsAtCompileTime> stan::math::generalized_inverse(const EigMat&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: typedef ‘using value_t = stan::value_type_t<T>’ locally defined but not used [-Wunused-local-typedefs]
   34 |   using value_t = value_type_t<EigMat>;
      |         ^~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/identity_matrix.hpp:19:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_array.hpp:37:49:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<int, __vector(2) long long int>, Eigen::Matrix<int, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<int, __vector(2) long long int>, Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<int, __vector(2) long long int>, Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<int, __vector(2) long long int>, Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_int_array.hpp:41:49:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 1, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_row_vector.hpp:32:28:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Matrix<double, 1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_row_vector.hpp:32:39:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array<double, -1, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:53:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:72:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:77:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:77:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Array<int, -1, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<int, -1, 1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<int, -1, 1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Array<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Array<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Array<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array<int, -1, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:77:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::PartialReduxExpr<const Eigen::Matrix<double, -1, -1>, Eigen::internal::member_lpnorm<1, double>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::PartialReduxExpr<const Eigen::Matrix<double, -1, -1>, Eigen::internal::member_lpnorm<1, double>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::PartialReduxExpr<const Eigen::Matrix<double, -1, -1>, Eigen::internal::member_lpnorm<1, double>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7:   required from ‘class Eigen::PartialReduxExpr<const Eigen::Matrix<double, -1, -1>, Eigen::internal::member_lpnorm<1, double>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:35:33:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:25:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:25:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:115:33:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/one_hot_row_vector.hpp:25:52:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/one_hot_vector.hpp:25:46:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:319,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:14,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tail.hpp: In function ‘std::vector<T> stan::math::tail(const std::vector<T>&, size_t)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: typedef ‘using idx_t = stan::math::index_type_t<std::vector<T> >’ locally defined but not used [-Wunused-local-typedefs]
   46 |   using idx_t = index_type_t<std::vector<T>>;
      |         ^~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/unitspaced_array.hpp:30:47:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:13:64:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:26:31:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:38:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0, 5>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:37:40:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_var_estimator.hpp:28:30:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/ode_store_sensitivities.hpp:40:64:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/fusion/functional/invocation/detail/that_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/fusion/functional/invocation/invoke.hpp:52,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/fusion/functional/adapter/fused.hpp:17,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/fusion/functional/generation/make_fused.hpp:13,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/fusion/include/make_fused.hpp:11,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/numeric/odeint/util/resize.hpp:28,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/numeric/odeint.hpp:25,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:15,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/get_pointer.hpp: At global scope:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/11/bits/locale_conv.h:41,
                 from /usr/include/c++/11/locale:43,
                 from /usr/include/c++/11/iomanip:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_scmet.cc:3:
/usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp: In function ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::bernoulli_logit_glm_lpmf(const T_y&, const T_x&, const T_alpha&, const T_beta&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: typedef ‘using T_y_val = std::conditional_t<stan::is_vector<T2>::value, Eigen::Matrix<typename stan::partials_return_type<T_y>::type, -1, 1>, typename stan::partials_return_type<T_y>::type>’ locally defined but not used [-Wunused-local-typedefs]
   59 |   using T_y_val =
      |         ^~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:31,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp: In function ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::beta_lpdf(const T_y&, const T_scale_succ&, const T_scale_fail&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: typedef ‘using T_partials_matrix = class Eigen::Matrix<typename stan::partials_return_type<T_y, T_scale_succ, T_scale_fail>::type, -1, 1>’ locally defined but not used [-Wunused-local-typedefs]
   50 |   using T_partials_matrix = Eigen::Matrix<T_partials_return, Eigen::Dynamic, 1>;
      |         ^~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:37,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp: In function ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::beta_proportion_lpdf(const T_y&, const T_loc&, const T_prec&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: typedef ‘using T_partials_array = class Eigen::Array<typename stan::partials_return_type<T_y, T_scale_succ, T_scale_fail>::type, -1, 1>’ locally defined but not used [-Wunused-local-typedefs]
   55 |   using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
      |         ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, -1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, -1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, -1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Array<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Array<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Array<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array<double, -1, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/categorical_logit_glm_lpmf.hpp:143:15:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from ‘class Eigen::RefBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:235:77:   required from ‘class Eigen::Ref<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/cumulative_sum.hpp:56:49:   required from ‘auto stan::math::cumulative_sum(const EigVec&) [with EigVec = Eigen::Matrix<double, -1, 1>; stan::require_eigen_vector_t<C>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/categorical_logit_rng.hpp:37:41:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:63,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp: In function ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::cauchy_lpdf(const T_y&, const T_loc&, const T_scale&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: typedef ‘using T_partials_array = class Eigen::Array<typename stan::partials_return_type<T_y, T_scale_succ, T_scale_fail>::type, -1, 1>’ locally defined but not used [-Wunused-local-typedefs]
   45 |   using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
      |         ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:74,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp: In function ‘stan::return_type_t<T1, T2> stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: typedef ‘using T_partials_vec = struct Eigen::Matrix<typename stan::partials_return_type<T_n, T_prob>::type, -1, 1>’ locally defined but not used [-Wunused-local-typedefs]
   60 |   using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>;
      |         ^~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:90:42:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)> [with auto:82 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:103:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:90:42:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)> [with auto:82 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:103:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:90:42:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)> [with auto:82 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:103:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:90:26:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)> [with auto:82 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:103:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:91,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp: In function ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::double_exponential_lpdf(const T_y&, const T_loc&, const T_scale&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: typedef ‘using T_partials_array = class Eigen::Array<typename stan::partials_return_type<T_y, T_scale_succ, T_scale_fail>::type, -1, 1>’ locally defined but not used [-Wunused-local-typedefs]
   44 |   using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
      |         ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:111,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp: In function ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::frechet_cdf(const T_y&, const T_shape&, const T_scale&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: typedef ‘using T_partials_array = class Eigen::Array<typename stan::partials_return_type<T_y, T_scale_succ, T_scale_fail>::type, -1, 1>’ locally defined but not used [-Wunused-local-typedefs]
   30 |   using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
      |         ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:38:59:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:75:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:76:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:135:41:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/hmm_latent_rng.hpp:83:27:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:42:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:32:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:36:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:47:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:109:64:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:108:51:   recursively required by substitution of ‘template<int Side, class Other> const Eigen::internal::triangular_solve_retval<Side, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Other> Eigen::TriangularViewImpl<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6, Eigen::Dense>::solve<Side, Other>(const Eigen::MatrixBase<U>&) const [with int Side = <missing>; Other = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:108:51:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48:   required from ‘struct Eigen::internal::accessors_level<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:32:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:32:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:43:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:111:51:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:111:52:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:46:43:   required from ‘stan::math::as_array_or_scalar<const std::vector<int>&>(const std::vector<int>&)::<lambda(auto:28&)> [with auto:28 = const std::vector<int>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:384:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar<const std::vector<int>&>(const std::vector<int>&)::<lambda(auto:28&)>; Args = {const std::vector<int, std::allocator<int> >&}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:46:21:   required from ‘auto stan::math::as_array_or_scalar(T&&) [with T = const std::vector<int>&; stan::require_std_vector_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:36:45:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:55:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:38:   required from ‘struct stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:50:   required from ‘auto stan::math::lgamma(const T&) [with T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; stan::require_not_nonscalar_prim_or_rev_kernel_expression_t<Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:44:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:28:   recursively required by substitution of ‘template<class ThenDerived> const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, ThenDerived, typename ThenDerived::ConstantReturnType> Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >::select<ThenDerived>(const Eigen::DenseBase<Derived>&, const typename ThenDerived::Scalar&) const [with ThenDerived = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:28:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:52:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:60:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from ‘class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:67:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:67:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from ‘class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:132:67:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:138:17:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:139:16:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:142:71:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::log1m_exp_fun; T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:38:   required from ‘struct stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log1m_exp.hpp:83:53:   required from ‘auto stan::math::log1m_exp(const T&) [with T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:142:59:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:142:79:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:143:34:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:143:34:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:140:58:   recursively required by substitution of ‘template<class ElseDerived> const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, typename ElseDerived::ConstantReturnType, ElseDerived> Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > > >::select<ElseDerived>(const typename ElseDerived::Scalar&, const Eigen::DenseBase<Derived>&) const [with ElseDerived = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:140:58:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:139:23:   recursively required by substitution of ‘template<class ElseDerived> const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, typename ElseDerived::ConstantReturnType, ElseDerived> Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > > >::select<ElseDerived>(const typename ElseDerived::Scalar&, const Eigen::DenseBase<Derived>&) const [with ElseDerived = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:139:23:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from ‘class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::Array<double, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >&)::<lambda(stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1> > > > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:144:16:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:164:57:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:164:77:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:164:78:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:164:28:   recursively required by substitution of ‘template<class ElseDerived> const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, typename ElseDerived::ConstantReturnType, ElseDerived> Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >::select<ElseDerived>(const typename ElseDerived::Scalar&, const Eigen::DenseBase<Derived>&) const [with ElseDerived = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:164:28:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:164:28:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:165:47:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from ‘class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:165:47:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:165:47:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:167:33:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:169:50:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:245,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp: In function ‘stan::return_type_t<T_shared_param, T_job_param> stan::math::ordered_logistic_lpmf(const T_y&, const T_loc&, const T_cut&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: typedef ‘using T_partials_array = class Eigen::Array<typename stan::partials_return_type<T_loc, T_cut>::type, -1, 1>’ locally defined but not used [-Wunused-local-typedefs]
   76 |   using T_partials_array = Eigen::Array<T_partials_return, -1, 1>;
      |         ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob.hpp:277,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp: In function ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::poisson_log_glm_lpmf(const T_y&, const T_x&, const T_alpha&, const T_beta&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: typedef ‘using T_alpha_val = std::conditional_t<stan::is_vector<T_prob>::value, Eigen::Array<typename stan::partials_return_type<T_cut>::type, -1, 1>, typename stan::partials_return_type<T_cut>::type>’ locally defined but not used [-Wunused-local-typedefs]
   62 |   using T_alpha_val = typename std::conditional_t<
      |         ^~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, -1, false, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:103:16:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:112:28:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:117:27:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:32,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:49,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp: In lambda function:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: typedef ‘using Block_ = class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>’ locally defined but not used [-Wunused-local-typedefs]
   83 |     using Block_ = Eigen::Block<Eigen::MatrixXd>;
      |           ^~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from ‘class Eigen::RefBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76:   required from ‘class Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:61:39:   required from ‘class Eigen::LLT<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:143:57:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:19:7:   required from ‘class stan::math::arena_matrix<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:145:6:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:43:17:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:34,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:49,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp: In function ‘stan::math::var_value<Eigen::Matrix<double, -1, -1> > stan::math::cholesky_factor_constrain(const T&, int, int)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: typedef ‘using T_scalar = stan::value_type_t<T>’ locally defined but not used [-Wunused-local-typedefs]
   32 |   using T_scalar = value_type_t<T>;
      |         ^~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:28:50:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = stan::math::var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:43:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:28:27:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = stan::math::var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:43:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:46:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = stan::math::var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:43:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:32:23:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = stan::math::var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:43:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:36:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:62:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:69:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:69:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:71:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/divide.hpp:73:41:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:45:15:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:96:21:   required from ‘class Eigen::Tridiagonalization<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:105:62:   required from ‘class Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:69:42:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::DiagonalWrapper<const Eigen::Matrix<double, -1, -1> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:69:58:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:66:   required from ‘stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:1&)> [with auto:1 = const Eigen::Matrix<stan::math::var_value<double>, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:384:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:1&)>; Args = {const Eigen::Matrix<stan::math::var_value<double, void>, -1, -1, 0, -1, -1>&}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:108:21:   required from ‘auto stan::math::value_of_rec(T&&) [with T = const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&; <template-parameter-1-2> = void; <template-parameter-1-3> = void]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:83:31:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:75:56:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:75:39:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:75:61:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:75:77:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:71,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:49,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp: In function ‘auto stan::math::generalized_inverse(const VarMat&)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: typedef ‘using value_t = stan::value_type_t<T>’ locally defined but not used [-Wunused-local-typedefs]
   64 |   using value_t = value_type_t<VarMat>;
      |         ^~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/grad.hpp:27:12:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)> [with auto:18 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:48:25:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)>; T2 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46:   required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:23:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)> [with auto:18 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:48:25:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)>; T2 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46:   required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:23:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:70:   required from ‘stan::math::apply_vector_unary<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, void>::apply<stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&, const stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)>&)::<lambda(const auto:5&)> [with auto:5 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:384:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, void>::apply<stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&, const stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)>&)::<lambda(const auto:5&)>; Args = {Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0> > >}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:23:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:18&)>; T2 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46:   required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:23:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_softmax.hpp:73:47:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/matrix_power.hpp:63:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/matrix_power.hpp:64:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/mdivide_left_tri.hpp:85:56:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:25:46:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:55:11:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:19:7:   required from ‘class stan::math::arena_matrix<Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:56:12:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:63:57:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Array<double, -1, 1>, -1, 1, false, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Array<double, -1, 1>, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Array<double, -1, 1>, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:86:37:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:86:58:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:33:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:40:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:78:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:78:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_cov_matrix.hpp:56:57:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_U.hpp:58:67:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_U.hpp:58:74:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_U.hpp:59:22:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:59:30:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:59:30:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:230:47:   required from ‘struct Eigen::internal::traits<Eigen::DiagonalWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:41:59:   required from ‘struct Eigen::EigenBase<Eigen::DiagonalWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:18:7:   required from ‘class Eigen::DiagonalBase<Eigen::DiagonalWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:245:7:   required from ‘class Eigen::DiagonalWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:61:53:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:41:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:57:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:58:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:80:15:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:111:72:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:111:73:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:23:36:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:25:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:57:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:61:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:75:   required from ‘stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&)::<lambda(auto:9&)> [with auto:9 = const Eigen::Matrix<stan::math::var_value<double>, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:384:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&)::<lambda(auto:9&)>; Args = {const Eigen::Matrix<stan::math::var_value<double, void>, -1, 1, 0, -1, 1>&}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:56:21:   required from ‘auto stan::math::value_of(EigMat&&) [with EigMat = const Eigen::Matrix<stan::math::var_value<double>, -1, 1>&; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_not_st_arithmetic<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/algebra_solver_fp.hpp:96:37:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/idas_forward_system.hpp:148:16:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:182:62:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:183:57:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:183:66:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:197:60:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:198:64:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:263:18:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:351:23:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:351:30:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:459:22:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:459:69:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:459:69:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:55:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:36:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:71:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:370:75:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:58:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:38:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:38:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:121:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0, 6>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 1>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:174:81:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:121:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0, 6>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_matrix.hpp:124:17:   required from ‘auto stan::math::to_matrix(const std::vector<T>&, int, int) [with T = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/read_dense_inv_metric.hpp:33:39:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:75:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:75:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:25:   recursively required by substitution of ‘template<class OtherDerived> typename Eigen::ScalarBinaryOpTraits<double, typename Eigen::internal::traits<T>::Scalar, Eigen::internal::scalar_product_op<double, typename Eigen::internal::traits<T>::Scalar> >::ReturnType Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >::dot<OtherDerived>(const Eigen::MatrixBase<Derived>&) const [with OtherDerived = <missing>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:25:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:27:31:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:74:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:74:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing.hpp:8,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/model_header.hpp:15,
                 from stanExports_scmet.h:11,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp: In function ‘void stan::model::assign(Mat1&&, const stan::model::cons_index_list<stan::model::index_multi, stan::model::cons_index_list<stan::model::index_multi, stan::model::nil_index_list> >&, const Mat2&, const char*, int)’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: typedef ‘using pair_type = struct std::pair<int, std::vector<int, stan::math::arena_allocator<int> > >’ locally defined but not used [-Wunused-local-typedefs]
  349 |   using pair_type = std::pair<int, arena_vec>;
      |         ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:19:7:   required from ‘class stan::math::arena_matrix<Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:157:15:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::apply(const Eigen::Matrix<double, -1, 1>&)::<lambda(stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::scalar_t)>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::apply(const Eigen::Matrix<double, -1, 1>&)::<lambda(stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::scalar_t)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::apply(const Eigen::Matrix<double, -1, 1>&)::<lambda(stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::scalar_t)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::apply(const Eigen::Matrix<double, -1, 1>&)::<lambda(stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::scalar_t)>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::apply(const Eigen::Matrix<double, -1, 1>&)::<lambda(stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>::scalar_t)>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::inv_logit_fun; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:38:   required from ‘struct stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>, void>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:53:   required from ‘auto stan::math::inv_logit(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_not_var_matrix_t<Container>* <anonymous> = 0; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<Container>* <anonymous> = 0]’
stanExports_scmet.h:936:45:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:35:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:75:   required from ‘stan::return_type_t<T> stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t<T>* <anonymous> = 0; stan::return_type_t<T> = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:27:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:32:   required from ‘stan::return_type_t<T> stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t<T>* <anonymous> = 0; stan::return_type_t<T> = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:27:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::scalar_t)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:38:   required from ‘struct stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:50:   required from ‘auto stan::math::lgamma(const T&) [with T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __vector(2) double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >; stan::require_not_nonscalar_prim_or_rev_kernel_expression_t<Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:29:   required from ‘stan::return_type_t<T> stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t<T>* <anonymous> = 0; stan::return_type_t<T> = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:27:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:28:37:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67:   required from ‘Derived& Eigen::ArrayBase<Derived>::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >; Eigen::ArrayBase<Derived>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:280:24:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:7,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:68,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In instantiation of ‘std::vector<long unsigned int> stan::io::array_var_context::validate_dims(const std::vector<std::__cxx11::basic_string<char> >&, T, const std::vector<std::vector<long unsigned int> >&) [with T = long unsigned int]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:96:48:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:73:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<long unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |     for (int i = 0; i < dims.size(); i++) {
      |                     ~~^~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In instantiation of ‘std::vector<long unsigned int> stan::io::array_var_context::validate_dims(const std::vector<std::__cxx11::basic_string<char> >&, T, const std::vector<std::vector<long unsigned int> >&) [with T = long int]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:117:48:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:73:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<long unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp: In instantiation of ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’:
stanExports_scmet.cc:30:89:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:433:34:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:12,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = stan::math::check_not_nan<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<S>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:47:30:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:158:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  158 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = stan::math::check_not_nan<Eigen::Matrix<double, -1, -1> >(const char*, const char*, const Eigen::Matrix<double, -1, -1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, -1>; Indexings = {}; stan::require_eigen_t<S>* <anonymous> = 0; std::enable_if_t<(((!(Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit)) && (! T::IsVectorAtCompileTime)) && (!(Eigen::internal::traits<_Rhs>::Flags & Eigen::RowMajorBit)))>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:74:30:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:222:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  222 |   for (size_t i = 0; i < x.rows(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:223:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  223 |     for (size_t j = 0; j < x.cols(); j++) {
      |                        ~~^~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = stan::math::check_finite<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<S>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20:   required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:21:29:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:158:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  158 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = stan::math::check_positive<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<S>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive.hpp:29:20:   required from ‘void stan::math::check_positive(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:22:31:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:158:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:68,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp: In instantiation of ‘int stan::services::standalone_generate(const Model&, const MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:46:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:30:89:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:89:22: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
   89 |   if (p_names.size() != draws.cols()) {
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  107 |   for (size_t i = 0; i < draws.rows(); ++i) {
      |                      ~~^~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, 1, -1, false, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Matrix<double, -1, -1>, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:111:65:   required from ‘int stan::services::standalone_generate(const Model&, const MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:46:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:30:89:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/concept/assert.hpp:35,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/concept_check.hpp:20,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/concepts.hpp:19,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/size_type.hpp:20,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/size.hpp:21,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/functions.hpp:20,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/iterator_range_core.hpp:38,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/lexical_cast.hpp:30,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/callbacks/writer.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/filtered_values.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:23,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint<Model>::failed() [with Model = boost::algorithm::FinderConcept<boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>, __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/find_format.hpp:98:13:   required from ‘void boost::algorithm::find_format(SequenceT&, FinderT, FormatterT) [with SequenceT = std::__cxx11::basic_string<char>; FinderT = boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>; FormatterT = boost::algorithm::detail::const_formatF<boost::iterator_range<const char*> >]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/replace.hpp:179:44:   required from ‘void boost::algorithm::replace_first(SequenceT&, const Range1T&, const Range2T&) [with SequenceT = std::__cxx11::basic_string<char>; Range1T = char [11]; Range2T = char [1]]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:117:29:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull]
   65 |     static void failed() { ((Model*)0)->constraints(); }
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:26,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string.hpp:23,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:46,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:40:18: note: in a call to non-static member function ‘void boost::algorithm::FinderConcept<FinderT, IteratorT>::constraints() [with FinderT = boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>; IteratorT = __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> >]’
   40 |             void constraints()
      |                  ^~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/concept/assert.hpp:35,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/concept_check.hpp:20,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/concepts.hpp:19,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/size_type.hpp:20,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/size.hpp:21,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/functions.hpp:20,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/range/iterator_range_core.hpp:38,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/lexical_cast.hpp:30,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/callbacks/writer.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/filtered_values.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:23,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint<Model>::failed() [with Model = boost::algorithm::FormatterConcept<boost::algorithm::detail::const_formatF<boost::iterator_range<const char*> >, boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>, __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/find_format.hpp:103:13:   required from ‘void boost::algorithm::find_format(SequenceT&, FinderT, FormatterT) [with SequenceT = std::__cxx11::basic_string<char>; FinderT = boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>; FormatterT = boost::algorithm::detail::const_formatF<boost::iterator_range<const char*> >]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/replace.hpp:179:44:   required from ‘void boost::algorithm::replace_first(SequenceT&, const Range1T&, const Range2T&) [with SequenceT = std::__cxx11::basic_string<char>; Range1T = char [11]; Range2T = char [1]]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:117:29:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull]
   65 |     static void failed() { ((Model*)0)->constraints(); }
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:26,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:16,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string.hpp:23,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:4,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:46,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:65:18: note: in a call to non-static member function ‘void boost::algorithm::FormatterConcept<FormatterT, FinderT, IteratorT>::constraints() [with FormatterT = boost::algorithm::detail::const_formatF<boost::iterator_range<const char*> >; FinderT = boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>; IteratorT = __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> >]’
   65 |             void constraints()
      |                  ^~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Matrix<double, -1, 1>, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:535:19:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagType = Eigen::Matrix<double, -1, 1>; SubDiagType = Eigen::Matrix<double, -1, 1>; Eigen::Index = long int]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:439:49:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_cholesky_factor.hpp:7,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err.hpp:7,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:12,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:10,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp: In instantiation of ‘static void stan::math::internal::less_or_equal<T_y, T_high, is_vec>::check(const char*, const char*, const T_y&, const T_high&) [with T_y = long unsigned int; T_high = long int; bool is_vec = false]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp:74:74:   required from ‘void stan::math::check_less_or_equal(const char*, const char*, const T_y&, const T_high&) [with T_y = long unsigned int; T_high = long int]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:78:36:   required from ‘std::vector<long unsigned int> stan::io::array_var_context::validate_dims(const std::vector<std::__cxx11::basic_string<char> >&, T, const std::vector<std::vector<long unsigned int> >&) [with T = long int]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:117:48:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp:23:15: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘long int’ [-Wsign-compare]
   23 |       if (!(y <= high_vec[n])) {
      |            ~~~^~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Matrix<double, -1, 1>; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op<double, double>; Derived = Eigen::internal::redux_evaluator<Eigen::Matrix<double, -1, 1> >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:438:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:86:18:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)> [with auto:82 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:103:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  650 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:90:26:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)> [with auto:82 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:103:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:82&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:496,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits<double, double, false, false>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:72:102:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Eigen::SelfAdjointView<MatrixType, Mode>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:391:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  391 |   typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:392:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  392 |   typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:393:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  393 |   typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
      |                                                                         ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:447:40:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:508:91:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, -1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:508:101:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:191:25:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:115:20:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:18:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:15:87:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:34:44:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:35:44:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8:   required from ‘struct stan::is_any_var_matrix<const Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var_value<double, void>, -1, 1, 0, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7:   required by substitution of ‘template<class ReturnType, class ... Types> using return_var_matrix_t = std::conditional_t<stan::is_any_var_matrix<ReturnType, Types ...>::value, stan::math::var_value<typename stan::math::promote_scalar_type<double, typename stan::plain_type<T>::type, void>::type>, typename stan::math::promote_scalar_type<stan::math::var_value<double>, typename stan::plain_type<T>::type, void>::type> [with ReturnType = const Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>; Types = {Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var_value<double, void>, -1, 1, 0, -1, 1>}]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:36:11:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:24:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:40:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:66:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, 5>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:43:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:24:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:54:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, 5>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:47:38:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:48:54:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8:   required from ‘struct stan::is_any_var_matrix<const Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var_value<double, void>, -1, 1, 0, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7:   required by substitution of ‘template<class ReturnType, class ... Types> using return_var_matrix_t = std::conditional_t<stan::is_any_var_matrix<ReturnType, Types ...>::value, stan::math::var_value<typename stan::math::promote_scalar_type<double, typename stan::plain_type<T>::type, void>::type>, typename stan::math::promote_scalar_type<stan::math::var_value<double>, typename stan::plain_type<T>::type, void>::type> [with ReturnType = const Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix<double, -1, 1>, 0>; Types = {Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var_value<double, void>, -1, 1, 0, -1, 1>}]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:55:11:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:53:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:37:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of<stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&>(stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of<stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&>(stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::value_of<stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&>(stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of<stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&>(stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of<stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&>(stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:75:   required from ‘stan::math::value_of<stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&>(stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >&)::<lambda(auto:9&)> [with auto:9 = stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, -1> >]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:384:41:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:66:48:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8:   required from ‘struct stan::is_any_var_matrix<const Eigen::Product<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var_value<double, void>, -1, 1, 0, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7:   required by substitution of ‘template<class ReturnType, class ... Types> using return_var_matrix_t = std::conditional_t<stan::is_any_var_matrix<ReturnType, Types ...>::value, stan::math::var_value<typename stan::math::promote_scalar_type<double, typename stan::plain_type<T>::type, void>::type>, typename stan::math::promote_scalar_type<stan::math::var_value<double>, typename stan::plain_type<T>::type, void>::type> [with ReturnType = const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>; Types = {Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var_value<double, void>, -1, 1, 0, -1, 1>}]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:65:11:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:43:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:46:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:738:46:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, -1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:75:   required from ‘stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&>(const Eigen::Matrix<stan::math::var_value<double>, -1, -1>&)::<lambda(auto:9&)> [with auto:9 = const Eigen::Matrix<stan::math::var_value<double>, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:384:41:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:53:61:   required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix<stan::math::var_value<double>, -1, -1>; T2 = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; stan::require_all_matrix_t<EigMat1, EigMat2>* <anonymous> = 0; stan::require_any_st_var<T1, T2>* <anonymous> = 0; stan::require_return_type_t<stan::is_var, T1, T2>* <anonymous> = 0; stan::require_not_row_and_col_vector_t<T1, T2>* <anonymous> = 0]’
stanExports_scmet.h:746:17:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/model_header.hpp:8,
                 from stanExports_scmet.h:11,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/reader.hpp: In instantiation of ‘T stan::io::reader<T>::scalar() [with T = double]’:
stanExports_scmet.h:903:28:   required from ‘void model_scmet_namespace::model_scmet::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; VecR = std::vector<double>; VecI = std::vector<int>; VecVar = std::vector<double>; stan::require_vector_like_vt<std::is_floating_point, VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::require_std_vector_vt<std::is_floating_point, VecVar>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1362:23:   required from ‘void model_scmet_namespace::model_scmet::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:23:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:26:89:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/reader.hpp:139:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >::Index’ {aka ‘long int’} [-Wsign-compare]
  139 |     if (pos_ >= data_r_.size()) {
      |         ~~~~~^~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, -1, 1, true, true>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1307:33:   required from ‘const Scalar Eigen::internal::evaluator<Eigen::PartialReduxExpr<ArgType, MemberOp, Direction> >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Matrix<double, -1, -1>; MemberOp = Eigen::internal::member_lpnorm<1, double>; int Direction = 0; Eigen::internal::evaluator<Eigen::PartialReduxExpr<ArgType, MemberOp, Direction> >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:381:29:   required from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::PartialReduxExpr<const Eigen::Matrix<double, -1, -1>, Eigen::internal::member_lpnorm<1, double>, 0>; Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:194:32:   required from ‘static Eigen::internal::redux_impl<Func, Derived, 0, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 0, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op<double, double>; Derived = Eigen::internal::redux_evaluator<Eigen::PartialReduxExpr<const Eigen::Matrix<double, -1, -1>, Eigen::internal::member_lpnorm<1, double>, 0> >; Eigen::internal::redux_impl<Func, Derived, 0, 0>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double>; Derived = Eigen::PartialReduxExpr<const Eigen::Matrix<double, -1, -1>, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:438:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::PartialReduxExpr<const Eigen::Matrix<double, -1, -1>, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:35:44:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:496,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs<Scalar, Index, DataMapper, nr, 0, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long int, 0>; int nr = 4; bool Conjugate = false; bool PanelMode = false]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:100:15:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Eigen::SelfAdjointView<MatrixType, Mode>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1981:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1981 |           PacketBlock<Packet,(PacketSize%4)==0?4:PacketSize> kernel;
      |                                                              ^~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs<Scalar, Index, DataMapper, Pack1, Pack2, 1, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long int, 1>; int Pack1 = 4; int Pack2 = 2; bool Conjugate = false; bool PanelMode = false]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:106:17:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Eigen::SelfAdjointView<MatrixType, Mode>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1847:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1847 |             PacketBlock<Packet> kernel;
      |                                 ^~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1847:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel<LhsScalar, RhsScalar, Index, DataMapper, mr, nr, ConjugateLhs, ConjugateRhs>::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, Eigen::internal::gebp_kernel<LhsScalar, RhsScalar, Index, DataMapper, mr, nr, ConjugateLhs, ConjugateRhs>::ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper<double, long int, 0, 0, 1>; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; Eigen::internal::gebp_kernel<LhsScalar, RhsScalar, Index, DataMapper, mr, nr, ConjugateLhs, ConjugateRhs>::ResScalar = double]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:113:15:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Eigen::SelfAdjointView<MatrixType, Mode>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1537:103: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1537 |           const int SResPacketHalfSize = unpacket_traits<typename unpacket_traits<SResPacket>::half>::size;
      |                                                                                                       ^~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1592:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1592 |               typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SResPacket>::half,SResPacket>::type SResPacketHalf;
      |                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1593:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1593 |               typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SLhsPacket>::half,SLhsPacket>::type SLhsPacketHalf;
      |                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1594:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1594 |               typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SLhsPacket>::half,SRhsPacket>::type SRhsPacketHalf;
      |                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1595:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1595 |               typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SAccPacket>::half,SAccPacket>::type SAccPacketHalf;
      |                                                                                                                                       ^~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:370,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 16>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 4>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:155:52:   required from ‘void Eigen::internal::tribb_kernel<LhsScalar, RhsScalar, Index, mr, nr, ConjLhs, ConjRhs, ResInnerStride, UpLo>::operator()(Eigen::internal::tribb_kernel<LhsScalar, RhsScalar, Index, mr, nr, ConjLhs, ConjRhs, ResInnerStride, UpLo>::ResScalar*, Index, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int ResInnerStride = 1; int UpLo = 2; Eigen::internal::tribb_kernel<LhsScalar, RhsScalar, Index, mr, nr, ConjLhs, ConjRhs, ResInnerStride, UpLo>::ResScalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Eigen::SelfAdjointView<MatrixType, Mode>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::ResScalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Eigen::SelfAdjointView<MatrixType, Mode>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:368:46:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:368:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:445,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:71:51:   required from ‘class Eigen::internal::visitor_evaluator<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:110:17:   required from ‘void Eigen::DenseBase<Derived>::visit(Visitor&) const [with Visitor = Eigen::internal::min_coeff_visitor<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:229:14:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::minCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:535:35:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagType = Eigen::Matrix<double, -1, 1>; SubDiagType = Eigen::Matrix<double, -1, 1>; Eigen::Index = long int]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:439:49:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:54:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  989 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:28:37:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  650 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:319:26:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:319:43:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:346:35:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:352:80:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:352:67:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:121:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0, 6>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:353:35:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0, 7>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:355:32:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:373:56:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 3>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:381:32:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:51:   required from ‘Eigen::LDLT<MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_eigen_matrix_dynamic_t<EigMat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:35:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_linesearch.hpp:247:23:   required from ‘int stan::optimization::WolfeLineSearch(FunctorType&, Scalar&, XType&, Scalar&, XType&, const XType&, const XType&, const Scalar&, const XType&, const Scalar&, const Scalar&, const Scalar&, const Scalar&, const Scalar&) [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; Scalar = double; XType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:209:28:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:115:20:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:18:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:15:87:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 2>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:78:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:33:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:115:20:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:18:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:15:87:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0, 5>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:64:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:33:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:115:20:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:18:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:15:87:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:52:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:33:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:115:20:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:18:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:15:87:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:47:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:33:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:115:20:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:18:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:15:87:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, 8>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:24:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:33:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:115:20:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:18:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:15:87:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:55:20:   required from ‘void stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::search_direction(stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::VectorT&, const VectorT&) const [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:254:25:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_scmet_namespace::model_scmet>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:115:20:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_scmet_namespace::model_scmet]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:18:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:15:87:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/model_header.hpp:8,
                 from stanExports_scmet.h:11,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/reader.hpp: In instantiation of ‘T stan::io::reader<T>::scalar() [with T = stan::math::var_value<double>]’:
stanExports_scmet.h:710:28:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/io/reader.hpp:139:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::Index’ {aka ‘long int’} [-Wsign-compare]
  139 |     if (pos_ >= data_r_.size()) {
      |         ~~~~~^~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Core:439,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_scmet.h:9,
                 from stanExports_scmet.cc:5:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&>(const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&>(const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&>(const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of<const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&>(const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&>(const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&)::<lambda(auto:9&)>::<lambda(const auto:10&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:75:   required from ‘stan::math::value_of<const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&>(const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >&)::<lambda(auto:9&)> [with auto:9 = const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:384:41:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:65:31:   required from ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; T_loc = Eigen::Matrix<double, -1, 1>; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T_x, T_alpha, T_beta> = stan::math::var_value<double>]’
stanExports_scmet.h:805:45:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:85:40:   required from ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; T_loc = Eigen::Matrix<double, -1, 1>; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T_x, T_alpha, T_beta> = stan::math::var_value<double>]’
stanExports_scmet.h:805:45:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:85:50:   required from ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; T_loc = Eigen::Matrix<double, -1, 1>; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T_x, T_alpha, T_beta> = stan::math::var_value<double>]’
stanExports_scmet.h:805:45:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_scmet.h:1374:49:   required from ‘T__ model_scmet_namespace::model_scmet::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:79:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_scmet_namespace::model_scmet; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.18-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:49:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_scmet_namespace::model_scmet; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_scmet.cc:23:88:   required from here
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.18-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:87:62:   required from ‘stan::return_type_t<T_x, T_alpha, T_beta> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; T_loc = Eigen::Matrix<double, -1, 1>; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T_x, T_alpha, T_beta> = stan::math::var_value<double>]’
stanExports_scmet.h:805:45:   required from ‘stan::scalar_type_t<T2> model_scmet_namespace::model_scmet::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> =