Lauren Hsu
| Snapshot Date: 2023-12-04 14:05:07 -0500 (Mon, 04 Dec 2023) |
| git_url: https://git.bioconductor.org/packages/corral |
| git_branch: RELEASE_3_18 |
| git_last_commit: ff9dade |
| git_last_commit_date: 2023-10-24 11:23:12 -0500 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-12-05 11:36:32 -0500 (Tue, 05 Dec 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" | 4688 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4421 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4440 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 438/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| corral 1.12.0 (landing page) Lauren Hsu
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the corral package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/corral.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: corral |
| Version: 1.12.0 |
| Command: chmod a+r corral -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data corral |
| StartedAt: 2023-12-04 18:00:30 -0500 (Mon, 04 Dec 2023) |
| EndedAt: 2023-12-04 18:03:05 -0500 (Mon, 04 Dec 2023) |
| EllapsedTime: 154.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r corral -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data corral ### ############################################################################## ############################################################################## * checking for file 'corral/DESCRIPTION' ... OK * preparing 'corral': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'corral_dimred.Rmd' using rmarkdown Quitting from lines 97-127 [unnamed-chunk-5] (corral_dimred.Rmd) Error: processing vignette 'corral_dimred.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building 'corral_dimred.Rmd' --- re-building 'corralm_alignment.Rmd' using rmarkdown --- finished re-building 'corralm_alignment.Rmd' SUMMARY: processing the following file failed: 'corral_dimred.Rmd' Error: Vignette re-building failed. Execution halted