Pierrick Roger
| Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_18 |
| git_last_commit: 0efcfbf |
| git_last_commit_date: 2023-10-24 11:38:18 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-04-17 11:35:48 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 198/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.8.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.8.0 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings biodbHmdb_1.8.0.tar.gz |
| StartedAt: 2024-04-15 20:33:22 -0400 (Mon, 15 Apr 2024) |
| EndedAt: 2024-04-15 20:34:13 -0400 (Mon, 15 Apr 2024) |
| EllapsedTime: 51.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings biodbHmdb_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking installed package size ... NOTE
installed size is 7.5Mb
sub-directories of 1Mb or more:
libs 6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘biodbHmdb.Rmd’ using ‘UTF-8’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-04-15 20:33:52.839][biodb::testContext]
biodb.INFO [2024-04-15 20:33:52.841][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-15 20:33:52.843][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-04-15 20:33:52.844][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-15 20:33:52.845][biodb::testContext]
biodb.INFO [2024-04-15 20:33:52.846][biodb::testThat]
biodb.INFO [2024-04-15 20:33:52.847][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-04-15 20:33:52.848][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:52.849][biodb::testThat]
biodb.INFO [2024-04-15 20:33:52.948][biodb::testContext]
biodb.INFO [2024-04-15 20:33:52.949][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-15 20:33:52.950][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-04-15 20:33:52.951][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-15 20:33:52.952][biodb::testContext]
biodb.INFO [2024-04-15 20:33:52.960][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-04-15 20:33:52.961][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-04-15 20:33:52.969][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:33:52.970][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-04-15 20:33:52.971][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-04-15 20:33:52.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:52.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:52.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:52.974][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-04-15 20:33:52.992][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-04-15 20:33:52.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:52.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:52.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:52.995][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-04-15 20:33:52.996][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-04-15 20:33:52.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.004][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-04-15 20:33:53.005][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-04-15 20:33:53.007][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-04-15 20:33:53.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.011][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-04-15 20:33:53.012][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-04-15 20:33:53.013][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-04-15 20:33:53.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.017][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-04-15 20:33:53.018][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-04-15 20:33:53.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.021][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-04-15 20:33:53.023][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-04-15 20:33:53.024][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-04-15 20:33:53.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.027][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-04-15 20:33:53.029][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-04-15 20:33:53.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.032][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-04-15 20:33:53.033][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-04-15 20:33:53.034][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-04-15 20:33:53.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.038][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-04-15 20:33:53.039][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-04-15 20:33:53.040][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-04-15 20:33:53.041][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-04-15 20:33:53.042][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-04-15 20:33:53.043][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-04-15 20:33:53.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.047][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-04-15 20:33:53.048][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-04-15 20:33:53.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.052][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-04-15 20:33:53.053][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-04-15 20:33:53.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.057][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-04-15 20:33:53.058][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-04-15 20:33:53.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.062][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-04-15 20:33:53.063][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-04-15 20:33:53.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.067][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-04-15 20:33:53.068][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-04-15 20:33:53.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.072][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-04-15 20:33:53.073][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-04-15 20:33:53.077][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-04-15 20:33:53.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.081][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-04-15 20:33:53.082][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-04-15 20:33:53.083][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-04-15 20:33:53.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.090][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-04-15 20:33:53.144][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.167][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-04-15 20:33:53.169][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.171][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:53.172][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.174][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.176][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.177][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.179][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-15 20:33:53.181][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:53.182][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.184][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-04-15 20:33:53.186][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:53.187][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.189][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.190][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:33:53.190][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-15 20:33:53.190][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-15 20:33:53.190][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-15 20:33:53.190][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-15 20:33:53.192][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:33:53.194][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.195][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.197][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:53.198][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.201][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.203][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.204][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:53.206][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:53.207][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.209][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.211][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-04-15 20:33:53.214][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.216][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-04-15 20:33:53.217][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.219][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:53.221][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.222][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.224][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.225][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.227][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-15 20:33:53.229][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:53.230][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.232][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-04-15 20:33:53.234][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:53.235][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.237][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.239][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:33:53.239][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-15 20:33:53.239][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-15 20:33:53.239][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-15 20:33:53.239][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-15 20:33:53.240][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:33:53.242][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.243][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.245][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:53.246][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.247][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.248][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.249][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.250][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:53.251][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:53.252][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.253][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.254][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-04-15 20:33:53.256][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.257][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-04-15 20:33:53.258][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.259][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:53.260][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.261][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.261][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.262][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.263][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-15 20:33:53.264][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:53.265][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.266][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-04-15 20:33:53.267][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:53.268][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.269][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.270][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.271][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:33:53.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.274][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:53.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.275][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.276][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.277][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.278][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:53.279][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:53.280][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.281][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.282][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-04-15 20:33:53.284][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.285][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-04-15 20:33:53.286][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.287][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:53.288][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.289][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.289][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.290][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.291][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-15 20:33:53.292][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:53.293][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.294][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-04-15 20:33:53.295][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:53.296][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.297][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.298][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.299][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:33:53.300][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.301][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.302][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:53.303][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.304][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.305][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.305][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.306][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:53.307][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:53.308][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.309][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.313][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:33:53.314][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.393][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-04-15 20:33:53.398][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-04-15 20:33:53.399][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-04-15 20:33:53.400][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-04-15 20:33:53.402][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-04-15 20:33:53.403][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-15 20:33:53.404][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-04-15 20:33:53.406][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-04-15 20:33:53.407][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-04-15 20:33:53.408][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-15 20:33:53.410][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-15 20:33:53.411][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-04-15 20:33:53.412][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-04-15 20:33:53.414][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-04-15 20:33:53.415][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-04-15 20:33:53.416][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-15 20:33:53.418][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-04-15 20:33:53.419][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-04-15 20:33:53.420][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-04-15 20:33:53.422][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-04-15 20:33:53.423][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-04-15 20:33:53.424][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-04-15 20:33:53.426][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-04-15 20:33:53.427][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-04-15 20:33:53.428][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-04-15 20:33:53.430][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-04-15 20:33:53.431][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-04-15 20:33:53.432][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-04-15 20:33:53.434][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-04-15 20:33:53.435][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-04-15 20:33:53.436][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-04-15 20:33:53.438][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-04-15 20:33:53.439][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-04-15 20:33:53.440][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-04-15 20:33:53.441][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-04-15 20:33:53.443][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-04-15 20:33:53.444][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-04-15 20:33:53.445][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-04-15 20:33:53.447][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-04-15 20:33:53.448][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-04-15 20:33:53.449][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-04-15 20:33:53.451][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-04-15 20:33:53.452][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-04-15 20:33:53.453][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-04-15 20:33:53.455][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-04-15 20:33:53.456][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-04-15 20:33:53.457][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-04-15 20:33:53.459][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-04-15 20:33:53.460][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-04-15 20:33:53.461][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-04-15 20:33:53.463][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-04-15 20:33:53.464][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-04-15 20:33:53.465][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-04-15 20:33:53.467][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-04-15 20:33:53.468][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-04-15 20:33:53.469][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-04-15 20:33:53.471][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-04-15 20:33:53.472][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-04-15 20:33:53.473][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-04-15 20:33:53.475][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-04-15 20:33:53.476][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-04-15 20:33:53.477][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-04-15 20:33:53.478][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-04-15 20:33:53.480][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-04-15 20:33:53.481][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-04-15 20:33:53.482][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-04-15 20:33:53.484][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-04-15 20:33:53.485][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-04-15 20:33:53.486][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-04-15 20:33:53.488][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-04-15 20:33:53.489][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-04-15 20:33:53.490][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-04-15 20:33:53.492][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-04-15 20:33:53.493][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-04-15 20:33:53.495][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-04-15 20:33:53.496][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-04-15 20:33:53.497][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-04-15 20:33:53.499][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-04-15 20:33:53.500][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-04-15 20:33:53.501][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-04-15 20:33:53.503][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-04-15 20:33:53.504][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-04-15 20:33:53.505][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-04-15 20:33:53.511][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-04-15 20:33:53.513][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-04-15 20:33:53.516][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:33:53.517][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.519][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:53.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:53.632][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-04-15 20:33:53.641][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:33:53.643][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.644][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.645][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.646][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:53.647][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.648][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-04-15 20:33:53.648][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.649][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.650][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-04-15 20:33:53.651][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:53.652][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.653][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-04-15 20:33:53.654][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-04-15 20:33:53.655][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-04-15 20:33:53.656][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:53.657][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:33:53.657][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-04-15 20:33:53.657][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-04-15 20:33:53.658][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-04-15 20:33:53.659][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.660][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.661][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:53.662][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:53.663][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:53.664][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:53.665][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-15 20:33:53.665][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-04-15 20:33:53.666][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:53.666][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:53.667][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:53.668][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:53.674][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-04-15 20:33:53.675][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-15 20:33:53.677][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-15 20:33:53.678][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-15 20:33:53.680][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-15 20:33:53.704][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:33:53.705][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-04-15 20:33:53.709][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:33:53.713][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:33:53.724][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:33:53.725][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:33:53.726][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-04-15 20:33:53.727][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-04-15 20:33:53.728][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-15 20:33:53.728][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-04-15 20:33:53.729][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:53.730][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:53.730][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-04-15 20:33:53.731][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-04-15 20:33:53.732][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:33:53.748][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:33:53.749][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:33:53.750][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:33:53.752][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:33:53.753][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:33:53.754][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-04-15 20:33:53.762][biodb::testThat]
biodb.INFO [2024-04-15 20:33:53.763][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-04-15 20:33:53.764][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:53.764][biodb::testThat]
biodb.TRACE[2024-04-15 20:33:53.768][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-04-15 20:33:53.770][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-15 20:33:53.774][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-15 20:33:53.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:33:53.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:53.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:53.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:53.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:53.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:53.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:33:53.802][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:53.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:53.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.805][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:53.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.822][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:53.823][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:53.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.825][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.849][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:53.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.853][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:53.854][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:53.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.856][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.857][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:53.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.861][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:53.862][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:53.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.864][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:53.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.872][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:53.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.877][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:53.878][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:53.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.880][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:53.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:53.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.888][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.890][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:53.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.929][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:53.930][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:53.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.932][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:53.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:53.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.937][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:53.938][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:53.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.940][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:53.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.945][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:53.946][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:53.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.947][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.953][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:53.954][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:53.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.955][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:53.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.960][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:53.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:53.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.963][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:53.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:53.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:53.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.971][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:53.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:53.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:53.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:53.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.979][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.984][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:53.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:53.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.987][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.992][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:53.993][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:53.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.995][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.003][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.008][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:33:54.009][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.011][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.012][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:33:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.062][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.070][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.079][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:54.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:54.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:54.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:54.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:54.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:54.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.193][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.238][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:33:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:33:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:54.354][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-04-15 20:33:54.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-15 20:33:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-15 20:33:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-15 20:33:54.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-15 20:33:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-04-15 20:33:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-04-15 20:33:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-04-15 20:33:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-04-15 20:33:54.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.429][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:54.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.459][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.462][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.478][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.481][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.485][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.486][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.488][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.511][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.512][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.514][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:54.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.542][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:54.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.573][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.592][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.599][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.622][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.625][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:54.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:54.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:54.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.641][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:54.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.648][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:54.649][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:54.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.651][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.652][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:54.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:54.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:54.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:54.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.675][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:54.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:54.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.678][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:54.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.697][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.701][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.702][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.704][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.736][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.774][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.776][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.779][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:54.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.819][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.821][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.824][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:54.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.849][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.850][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.851][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:54.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.878][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:54.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:54.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:54.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:54.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:54.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.909][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.935][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.958][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.959][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.961][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.962][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.973][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:54.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:54.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.976][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.980][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.981][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:54.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.983][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.988][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.989][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:54.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.991][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:54.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:54.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:54.998][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.002][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.003][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.005][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.009][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.010][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.012][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.017][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.018][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.021][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.025][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.026][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.028][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.032][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.033][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.035][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.039][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:55.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:55.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.042][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:55.048][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:55.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.050][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.057][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.061][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.062][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.064][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.076][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.083][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.091][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.095][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.096][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.098][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:55.103][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:55.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.105][ef$get] fields variable is a list.
biodb.INFO [2024-04-15 20:33:55.111][biodb::testThat]
biodb.INFO [2024-04-15 20:33:55.112][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-04-15 20:33:55.113][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:55.114][biodb::testThat]
biodb.DEBUG[2024-04-15 20:33:55.128][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-04-15 20:33:55.135][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-15 20:33:55.140][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.142][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-15 20:33:55.144][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-04-15 20:33:55.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-04-15 20:33:55.147][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-04-15 20:33:55.148][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-15 20:33:55.171][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-15 20:33:55.172][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-15 20:33:55.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:33:55.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:55.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:55.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:55.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:55.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:55.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:33:55.187][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.189][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.195][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.196][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.197][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.203][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.204][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.206][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.207][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.211][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.212][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.215][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.217][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.227][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.242][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.244][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.246][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.258][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.270][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.278][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.280][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.283][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.291][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.293][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.295][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.303][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:55.304][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:55.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.306][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:55.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:55.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:55.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.314][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:55.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.323][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.331][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.336][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.339][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.345][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.346][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.347][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:55.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:55.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.355][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:55.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.361][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:33:55.362][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.363][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:33:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.380][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.384][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:33:55.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.395][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.399][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:33:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:33:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:33:55.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:33:55.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:33:55.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:33:55.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.463][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.467][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.471][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:55.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:55.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:33:55.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:33:55.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:55.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:55.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:33:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:33:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:33:55.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:33:55.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:33:55.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:55.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:33:55.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:33:55.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.581][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:33:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.596][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:33:55.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:33:55.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.620][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:55.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:55.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.623][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:55.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:55.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.657][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-04-15 20:33:55.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-04-15 20:33:55.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-04-15 20:33:55.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-04-15 20:33:55.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-04-15 20:33:55.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-04-15 20:33:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-04-15 20:33:55.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-04-15 20:33:55.676][biodb::testThat]
biodb.INFO [2024-04-15 20:33:55.677][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-04-15 20:33:55.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:55.679][biodb::testThat]
biodb.TRACE[2024-04-15 20:33:55.682][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.685][ef$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.686][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-04-15 20:33:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.728][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-04-15 20:33:55.729][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-04-15 20:33:55.730][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-04-15 20:33:55.731][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-04-15 20:33:55.732][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.734][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.735][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:33:55.736][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.737][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:33:55.738][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:33:55.739][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:33:55.740][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:33:55.741][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:33:55.742][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-15 20:33:55.743][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-15 20:33:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:55.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.760][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-15 20:33:55.761][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-15 20:33:55.762][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-04-15 20:33:55.772][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.773][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.775][ef$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.776][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-04-15 20:33:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.795][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.801][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-04-15 20:33:55.854][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-04-15 20:33:55.855][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-04-15 20:33:55.856][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-04-15 20:33:55.869][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.871][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.872][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:33:55.873][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.874][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:33:55.889][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:33:55.890][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:33:55.891][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:33:55.892][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:33:55.893][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-15 20:33:55.894][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-15 20:33:55.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.899][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.903][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.907][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:55.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.911][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-15 20:33:55.912][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-15 20:33:55.913][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-04-15 20:33:55.923][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.924][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.926][ef$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.927][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-04-15 20:33:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.942][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.945][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.952][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-04-15 20:33:55.953][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-04-15 20:33:55.954][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-04-15 20:33:55.955][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-04-15 20:33:55.956][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.958][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.959][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:33:55.961][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:55.961][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:33:55.963][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:33:55.964][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:33:55.965][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:33:55.966][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:33:55.967][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-15 20:33:55.967][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-15 20:33:55.969][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:55.980][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:55.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:55.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:55.984][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-15 20:33:55.985][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-15 20:33:55.986][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-04-15 20:33:56.003][biodb::testThat]
biodb.INFO [2024-04-15 20:33:56.004][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-04-15 20:33:56.005][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:56.006][biodb::testThat]
biodb.TRACE[2024-04-15 20:33:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:56.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:56.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:56.037][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-04-15 20:33:56.038][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-04-15 20:33:56.039][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-04-15 20:33:56.040][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:56.042][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:56.043][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:33:56.044][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:56.045][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:33:56.047][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:33:56.048][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:33:56.049][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:33:56.049][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:33:56.050][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-15 20:33:56.051][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-15 20:33:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:56.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:56.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:56.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:56.068][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-15 20:33:56.069][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-04-15 20:33:56.083][biodb::testThat]
biodb.INFO [2024-04-15 20:33:56.084][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-04-15 20:33:56.085][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:56.085][biodb::testThat]
biodb.TRACE[2024-04-15 20:33:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-15 20:33:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-15 20:33:56.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-15 20:33:56.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-15 20:33:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-04-15 20:33:56.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-04-15 20:33:56.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-04-15 20:33:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-04-15 20:33:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-15 20:33:56.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-15 20:33:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-15 20:33:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-15 20:33:56.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-04-15 20:33:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-04-15 20:33:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-04-15 20:33:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-04-15 20:33:56.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:56.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-04-15 20:33:56.183][biodb::testThat]
biodb.INFO [2024-04-15 20:33:56.184][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-04-15 20:33:56.185][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:56.186][biodb::testThat]
biodb.INFO [2024-04-15 20:33:56.193][biodb::testThat]
biodb.INFO [2024-04-15 20:33:56.194][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-04-15 20:33:56.195][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:56.196][biodb::testThat]
biodb.INFO [2024-04-15 20:33:56.204][biodb::testThat]
biodb.INFO [2024-04-15 20:33:56.205][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-04-15 20:33:56.205][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:56.206][biodb::testThat]
biodb.DEBUG[2024-04-15 20:33:56.210][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-04-15 20:33:58.697][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-04-15 20:33:58.750][biodb::testThat]
biodb.INFO [2024-04-15 20:33:58.754][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-04-15 20:33:58.756][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:58.757][biodb::testThat]
biodb.DEBUG[2024-04-15 20:33:59.104][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-04-15 20:33:59.131][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:59.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:59.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.137][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.139][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:59.140][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:59.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.143][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.145][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:59.146][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:59.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.149][ef$get] fields variable is a list.
biodb.INFO [2024-04-15 20:33:59.151][biodb::testThat]
biodb.INFO [2024-04-15 20:33:59.153][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-04-15 20:33:59.154][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:59.155][biodb::testThat]
biodb.DEBUG[2024-04-15 20:33:59.158][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-04-15 20:33:59.254][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-15 20:33:59.256][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.258][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-15 20:33:59.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-04-15 20:33:59.277][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-04-15 20:33:59.279][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-04-15 20:33:59.280][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-15 20:33:59.281][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.283][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-15 20:33:59.284][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-15 20:33:59.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:33:59.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:59.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:59.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:33:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.302][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:59.331][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-04-15 20:33:59.332][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-04-15 20:33:59.350][biodb::testThat]
biodb.INFO [2024-04-15 20:33:59.352][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-04-15 20:33:59.353][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:59.354][biodb::testThat]
biodb.DEBUG[2024-04-15 20:33:59.362][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-04-15 20:33:59.363][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-04-15 20:33:59.364][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-15 20:33:59.366][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.367][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-15 20:33:59.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-04-15 20:33:59.371][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-04-15 20:33:59.372][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-04-15 20:33:59.373][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-15 20:33:59.374][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.376][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-15 20:33:59.377][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-15 20:33:59.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:33:59.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:59.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:59.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:33:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:59.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:59.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.400][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:59.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:33:59.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:33:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:33:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:33:59.427][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-04-15 20:33:59.428][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-04-15 20:33:59.429][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-04-15 20:33:59.443][biodb::testThat]
biodb.INFO [2024-04-15 20:33:59.444][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-04-15 20:33:59.445][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:59.446][biodb::testThat]
biodb.INFO [2024-04-15 20:33:59.469][biodb::testThat]
biodb.INFO [2024-04-15 20:33:59.470][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-04-15 20:33:59.471][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:59.472][biodb::testThat]
biodb.DEBUG[2024-04-15 20:33:59.475][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.476][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.478][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:33:59.479][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.480][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:33:59.481][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:33:59.483][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:33:59.484][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:33:59.485][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-04-15 20:33:59.493][biodb::testThat]
biodb.INFO [2024-04-15 20:33:59.494][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-04-15 20:33:59.495][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:33:59.496][biodb::testThat]
biodb.DEBUG[2024-04-15 20:33:59.498][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.500][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.501][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:33:59.503][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:33:59.504][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:33:59.505][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:33:59.506][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:33:59.507][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:33:59.508][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-04-15 20:33:59.517][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:33:59.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:33:59.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.520][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.521][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:33:59.522][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:33:59.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.530][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:33:59.531][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:59.532][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:33:59.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:33:59.534][ef$get] fields variable is a list.
biodb.INFO [2024-04-15 20:33:59.535][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-04-15 20:33:59.536][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-04-15 20:33:59.544][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-04-15 20:33:59.545][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-04-15 20:33:59.545][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:33:59.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:33:59.547][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.549][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-04-15 20:33:59.553][biodb::testContext]
biodb.INFO [2024-04-15 20:33:59.554][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-15 20:33:59.555][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-04-15 20:33:59.556][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-15 20:33:59.557][biodb::testContext]
biodb.INFO [2024-04-15 20:33:59.561][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-04-15 20:33:59.562][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-04-15 20:33:59.566][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:33:59.567][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-04-15 20:33:59.569][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-04-15 20:33:59.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.572][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-04-15 20:33:59.574][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-04-15 20:33:59.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.577][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-04-15 20:33:59.578][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-04-15 20:33:59.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.582][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-04-15 20:33:59.583][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-04-15 20:33:59.584][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-04-15 20:33:59.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.588][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-04-15 20:33:59.589][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-04-15 20:33:59.590][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-04-15 20:33:59.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.594][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-04-15 20:33:59.595][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-04-15 20:33:59.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.599][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-04-15 20:33:59.600][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-04-15 20:33:59.601][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-04-15 20:33:59.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.605][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-04-15 20:33:59.606][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-04-15 20:33:59.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.609][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-04-15 20:33:59.610][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-04-15 20:33:59.611][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-04-15 20:33:59.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.615][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-04-15 20:33:59.616][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-04-15 20:33:59.617][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-04-15 20:33:59.618][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-04-15 20:33:59.619][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-04-15 20:33:59.620][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-04-15 20:33:59.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.624][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-04-15 20:33:59.625][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-04-15 20:33:59.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.629][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-04-15 20:33:59.630][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-04-15 20:33:59.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.634][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-04-15 20:33:59.635][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-04-15 20:33:59.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.639][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-04-15 20:33:59.640][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-04-15 20:33:59.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.643][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-04-15 20:33:59.644][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-04-15 20:33:59.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.648][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-04-15 20:33:59.649][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-04-15 20:33:59.652][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-04-15 20:33:59.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.656][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-04-15 20:33:59.657][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-04-15 20:33:59.664][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-04-15 20:33:59.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.668][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-04-15 20:33:59.669][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.670][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-04-15 20:33:59.671][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.672][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:59.673][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.674][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.675][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.676][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.677][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-15 20:33:59.678][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:59.679][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.679][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-04-15 20:33:59.680][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:59.681][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.682][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.683][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:33:59.683][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-15 20:33:59.683][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-15 20:33:59.683][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-15 20:33:59.683][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-15 20:33:59.684][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:33:59.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:59.686][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:59.687][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:59.688][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:59.689][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:59.690][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.691][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.691][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:59.692][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:59.693][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.694][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.695][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-04-15 20:33:59.697][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.698][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-04-15 20:33:59.699][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.700][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:59.701][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.702][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.703][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.704][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.705][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-15 20:33:59.706][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:59.707][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.708][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-04-15 20:33:59.709][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:59.710][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.711][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.712][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:33:59.712][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-15 20:33:59.712][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-15 20:33:59.712][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-15 20:33:59.712][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-15 20:33:59.713][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:33:59.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:59.715][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:59.716][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:59.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:59.718][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:59.719][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.720][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.721][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:59.722][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:59.723][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.724][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.725][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-04-15 20:33:59.727][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.728][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-04-15 20:33:59.729][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.730][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:59.731][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.732][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.733][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.734][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.735][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-15 20:33:59.736][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:59.738][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.739][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-04-15 20:33:59.740][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:59.741][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.742][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.743][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.744][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:33:59.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:59.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:59.746][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:59.747][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:59.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:59.749][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.750][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.751][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:59.752][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:59.753][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.754][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.756][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-04-15 20:33:59.757][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.759][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-04-15 20:33:59.760][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.761][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:33:59.762][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.763][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.764][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.765][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.765][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-15 20:33:59.767][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:33:59.768][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.769][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-04-15 20:33:59.770][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:33:59.771][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.772][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:33:59.773][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.774][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:33:59.775][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:59.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:59.776][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:33:59.777][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:33:59.778][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:33:59.779][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:33:59.780][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.781][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:33:59.782][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:33:59.783][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:33:59.784][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:33:59.785][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:33:59.792][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:33:59.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:33:59.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:33:59.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:33:59.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:33:59.869][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-04-15 20:33:59.871][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-04-15 20:33:59.872][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-04-15 20:33:59.874][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-04-15 20:33:59.875][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-04-15 20:33:59.877][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-15 20:33:59.878][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-04-15 20:33:59.880][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-04-15 20:33:59.881][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-04-15 20:33:59.883][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-15 20:33:59.884][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-15 20:33:59.886][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-04-15 20:33:59.887][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-04-15 20:33:59.889][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-04-15 20:33:59.890][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-04-15 20:33:59.891][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-15 20:33:59.893][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-04-15 20:33:59.894][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-04-15 20:33:59.896][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-04-15 20:33:59.897][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-04-15 20:33:59.898][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-04-15 20:33:59.900][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-04-15 20:33:59.901][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-04-15 20:33:59.903][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-04-15 20:33:59.904][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-04-15 20:33:59.905][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-04-15 20:33:59.907][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-04-15 20:33:59.908][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-04-15 20:33:59.909][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-04-15 20:33:59.911][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-04-15 20:33:59.937][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-04-15 20:33:59.941][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-04-15 20:33:59.943][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-04-15 20:33:59.945][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-04-15 20:33:59.946][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-04-15 20:33:59.947][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-04-15 20:33:59.949][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-04-15 20:33:59.950][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-04-15 20:33:59.951][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-04-15 20:33:59.952][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-04-15 20:33:59.954][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-04-15 20:33:59.955][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-04-15 20:33:59.956][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-04-15 20:33:59.958][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-04-15 20:33:59.959][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-04-15 20:33:59.960][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-04-15 20:33:59.962][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-04-15 20:33:59.963][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-04-15 20:33:59.964][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-04-15 20:33:59.965][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-04-15 20:33:59.967][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-04-15 20:33:59.968][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-04-15 20:33:59.969][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-04-15 20:33:59.971][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-04-15 20:33:59.972][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-04-15 20:33:59.973][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-04-15 20:33:59.975][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-04-15 20:33:59.976][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-04-15 20:33:59.978][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-04-15 20:33:59.979][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-04-15 20:33:59.980][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-04-15 20:33:59.982][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-04-15 20:33:59.983][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-04-15 20:33:59.985][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-04-15 20:33:59.986][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-04-15 20:33:59.987][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-04-15 20:33:59.989][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-04-15 20:33:59.990][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-04-15 20:33:59.992][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-04-15 20:33:59.993][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-04-15 20:33:59.995][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-04-15 20:33:59.996][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-04-15 20:33:59.997][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-04-15 20:33:59.999][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-04-15 20:34:00.000][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-04-15 20:34:00.002][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-04-15 20:34:00.003][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-04-15 20:34:00.004][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-04-15 20:34:00.006][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-04-15 20:34:00.007][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-04-15 20:34:00.009][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-04-15 20:34:00.010][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-04-15 20:34:00.012][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-04-15 20:34:00.013][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-04-15 20:34:00.015][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-04-15 20:34:00.016][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:34:00.017][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.019][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.134][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-04-15 20:34:00.136][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:34:00.138][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:00.140][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.141][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.142][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:34:00.143][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:00.144][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-04-15 20:34:00.145][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.146][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.147][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-04-15 20:34:00.148][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:34:00.150][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.151][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-04-15 20:34:00.152][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-04-15 20:34:00.153][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-04-15 20:34:00.154][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:00.155][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:34:00.155][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-04-15 20:34:00.155][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-04-15 20:34:00.156][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-04-15 20:34:00.157][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:00.158][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:00.159][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:34:00.160][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:00.161][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:00.162][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.163][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-15 20:34:00.163][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-04-15 20:34:00.164][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:34:00.165][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:34:00.166][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.167][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:00.168][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-04-15 20:34:00.170][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-15 20:34:00.172][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-15 20:34:00.173][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-15 20:34:00.175][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-15 20:34:00.178][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:34:00.179][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-04-15 20:34:00.180][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:34:00.182][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:34:00.183][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:00.184][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:00.186][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-04-15 20:34:00.187][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-04-15 20:34:00.188][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-15 20:34:00.188][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-04-15 20:34:00.189][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:34:00.190][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:34:00.191][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-04-15 20:34:00.192][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-04-15 20:34:00.193][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:34:00.194][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:34:00.201][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:00.202][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:00.204][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:34:00.205][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:00.206][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-04-15 20:34:00.208][biodb::testThat]
biodb.INFO [2024-04-15 20:34:00.209][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-04-15 20:34:00.209][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:34:00.210][biodb::testThat]
biodb.DEBUG[2024-04-15 20:34:00.214][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:00.216][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:00.217][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:34:00.218][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:00.219][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:34:00.220][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:34:00.221][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:34:00.222][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:34:00.223][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:34:00.226][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-04-15 20:34:00.231][biodb::testThat]
biodb.INFO [2024-04-15 20:34:00.232][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-04-15 20:34:00.233][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:34:00.234][biodb::testThat]
biodb.DEBUG[2024-04-15 20:34:00.236][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-04-15 20:34:00.237][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-15 20:34:00.239][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:00.240][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-15 20:34:00.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-04-15 20:34:00.244][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-04-15 20:34:00.246][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-04-15 20:34:00.247][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-15 20:34:00.249][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-15 20:34:00.250][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-15 20:34:00.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:00.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:34:00.265][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.268][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.273][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.275][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.276][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.278][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.282][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.283][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.285][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.287][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.291][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.292][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.294][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.303][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.309][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.310][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.312][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.321][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.329][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.335][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.336][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.343][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.349][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.350][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.352][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.357][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:00.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:00.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.360][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:00.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:00.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:00.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:00.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.368][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:00.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:00.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.376][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.384][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.390][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.393][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.398][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:00.399][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:00.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.401][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.403][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:00.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:00.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:00.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:00.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.410][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:00.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:00.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.415][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:34:00.416][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:00.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.418][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.420][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:34:00.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:00.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.441][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.449][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.453][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.457][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:00.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:00.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:00.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:00.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:00.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:00.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:00.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:00.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:00.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:00.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:00.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:00.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.529][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:00.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:00.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:00.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:00.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:00.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:00.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:00.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:00.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:00.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:00.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:00.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:00.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:00.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.578][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:00.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.683][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.687][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.691][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:00.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:00.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:00.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:00.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:00.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.712][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:34:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.731][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:34:00.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:00.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:00.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:00.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.763][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:00.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:00.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:00.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:00.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.778][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:00.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:00.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:00.811][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-04-15 20:34:00.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:00.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:00.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:00.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:00.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-04-15 20:34:00.830][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-04-15 20:34:00.832][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-04-15 20:34:00.833][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-04-15 20:34:00.833][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-04-15 20:34:00.834][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:00.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:00.836][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:00.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:00.837][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-04-15 20:34:00.842][biodb::testContext]
biodb.INFO [2024-04-15 20:34:00.843][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-15 20:34:00.844][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-04-15 20:34:00.845][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-15 20:34:00.846][biodb::testContext]
biodb.INFO [2024-04-15 20:34:00.850][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-04-15 20:34:00.851][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-04-15 20:34:00.855][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:34:00.856][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-04-15 20:34:00.857][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-04-15 20:34:00.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.861][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-04-15 20:34:00.862][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-04-15 20:34:00.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.865][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-04-15 20:34:00.866][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-04-15 20:34:00.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.869][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-04-15 20:34:00.870][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-04-15 20:34:00.871][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-04-15 20:34:00.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.875][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-04-15 20:34:00.876][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-04-15 20:34:00.877][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-04-15 20:34:00.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.880][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-04-15 20:34:00.881][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-04-15 20:34:00.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.884][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-04-15 20:34:00.885][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-04-15 20:34:00.886][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-04-15 20:34:00.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.890][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-04-15 20:34:00.891][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-04-15 20:34:00.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.894][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-04-15 20:34:00.895][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-04-15 20:34:00.896][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-04-15 20:34:00.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.899][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-04-15 20:34:00.900][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-04-15 20:34:00.901][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-04-15 20:34:00.902][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-04-15 20:34:00.903][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-04-15 20:34:00.904][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-04-15 20:34:00.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.907][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-04-15 20:34:00.908][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-04-15 20:34:00.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.912][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-04-15 20:34:00.913][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-04-15 20:34:00.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.916][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-04-15 20:34:00.917][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-04-15 20:34:00.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.921][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-04-15 20:34:00.922][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-04-15 20:34:00.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.925][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-04-15 20:34:00.926][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-04-15 20:34:00.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.930][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-04-15 20:34:00.935][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-04-15 20:34:00.938][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-04-15 20:34:00.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.942][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-04-15 20:34:00.943][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-04-15 20:34:00.944][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-04-15 20:34:00.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:00.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:00.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:00.947][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-04-15 20:34:00.949][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:00.950][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-04-15 20:34:00.951][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.952][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:34:00.953][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.954][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.955][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:00.956][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.956][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-15 20:34:00.957][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:34:00.958][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.959][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-04-15 20:34:00.960][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:34:00.961][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:00.962][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.963][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:34:00.963][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-15 20:34:00.963][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-15 20:34:00.963][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-15 20:34:00.963][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-15 20:34:00.964][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:34:00.965][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:00.965][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:00.966][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:34:00.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:00.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:00.969][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.970][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:00.971][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:34:00.972][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:34:00.972][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:00.973][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:00.975][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-04-15 20:34:00.976][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:00.977][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-04-15 20:34:00.978][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.979][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:34:00.980][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.981][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.982][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:00.983][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.984][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-15 20:34:00.985][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:34:00.986][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.987][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-04-15 20:34:00.987][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:34:00.988][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:00.989][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:00.990][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:34:00.990][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-15 20:34:00.990][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-15 20:34:00.990][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-15 20:34:00.990][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-15 20:34:00.991][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:34:00.992][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:00.993][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:00.994][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:34:00.995][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:00.996][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:00.996][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:34:00.997][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:00.998][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:34:00.999][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:34:01.000][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.001][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.002][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-04-15 20:34:01.004][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.005][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-04-15 20:34:01.006][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.007][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:34:01.007][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.008][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.009][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.010][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.011][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-15 20:34:01.012][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:34:01.013][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.014][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-04-15 20:34:01.015][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:34:01.016][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.017][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.018][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.019][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:34:01.019][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:01.020][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:01.021][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:34:01.022][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:01.023][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:01.024][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.025][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.026][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:34:01.027][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:34:01.027][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.028][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.029][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-04-15 20:34:01.031][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.032][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-04-15 20:34:01.033][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.034][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:34:01.035][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.036][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.037][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.038][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.039][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-15 20:34:01.039][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:34:01.040][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.041][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-04-15 20:34:01.042][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:34:01.043][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.044][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.045][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.046][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-15 20:34:01.047][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:01.048][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:01.049][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:34:01.054][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:01.055][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:01.056][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.057][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.058][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:34:01.059][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:34:01.060][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.061][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.062][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:34:01.063][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.135][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-04-15 20:34:01.136][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-04-15 20:34:01.138][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-04-15 20:34:01.139][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-04-15 20:34:01.140][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-04-15 20:34:01.142][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-15 20:34:01.143][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-04-15 20:34:01.144][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-04-15 20:34:01.146][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-04-15 20:34:01.147][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-15 20:34:01.148][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-15 20:34:01.149][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-04-15 20:34:01.151][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-04-15 20:34:01.152][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-04-15 20:34:01.153][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-04-15 20:34:01.155][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-15 20:34:01.156][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-04-15 20:34:01.157][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-04-15 20:34:01.158][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-04-15 20:34:01.160][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-04-15 20:34:01.161][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-04-15 20:34:01.162][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-04-15 20:34:01.164][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-04-15 20:34:01.165][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-04-15 20:34:01.171][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-04-15 20:34:01.173][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-04-15 20:34:01.174][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-04-15 20:34:01.175][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-04-15 20:34:01.176][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-04-15 20:34:01.178][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-04-15 20:34:01.179][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-04-15 20:34:01.180][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-04-15 20:34:01.181][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-04-15 20:34:01.183][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-04-15 20:34:01.184][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-04-15 20:34:01.185][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-04-15 20:34:01.187][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-04-15 20:34:01.188][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-04-15 20:34:01.189][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-04-15 20:34:01.190][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-04-15 20:34:01.192][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-04-15 20:34:01.193][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-04-15 20:34:01.194][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-04-15 20:34:01.196][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-04-15 20:34:01.197][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-04-15 20:34:01.198][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-04-15 20:34:01.199][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-04-15 20:34:01.201][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-04-15 20:34:01.202][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-04-15 20:34:01.203][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-04-15 20:34:01.205][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-04-15 20:34:01.206][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-04-15 20:34:01.207][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-04-15 20:34:01.209][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-04-15 20:34:01.210][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-04-15 20:34:01.211][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-04-15 20:34:01.213][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-04-15 20:34:01.214][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-04-15 20:34:01.215][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-04-15 20:34:01.216][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-04-15 20:34:01.218][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-04-15 20:34:01.219][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-04-15 20:34:01.220][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-04-15 20:34:01.222][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-04-15 20:34:01.223][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-04-15 20:34:01.224][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-04-15 20:34:01.226][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-04-15 20:34:01.227][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-04-15 20:34:01.228][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-04-15 20:34:01.229][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-04-15 20:34:01.231][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-04-15 20:34:01.232][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-04-15 20:34:01.233][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-04-15 20:34:01.235][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-04-15 20:34:01.236][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-04-15 20:34:01.237][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-04-15 20:34:01.238][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-04-15 20:34:01.240][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-04-15 20:34:01.241][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-04-15 20:34:01.242][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-04-15 20:34:01.244][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-04-15 20:34:01.245][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-04-15 20:34:01.246][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-04-15 20:34:01.248][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-04-15 20:34:01.249][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-04-15 20:34:01.250][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-15 20:34:01.251][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.253][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-15 20:34:01.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.358][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-04-15 20:34:01.359][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:34:01.361][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.362][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.363][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.364][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-15 20:34:01.365][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.366][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-04-15 20:34:01.367][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.368][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.369][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-04-15 20:34:01.370][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-15 20:34:01.371][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.372][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-04-15 20:34:01.373][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-04-15 20:34:01.374][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-04-15 20:34:01.375][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-04-15 20:34:01.376][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-15 20:34:01.376][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-04-15 20:34:01.376][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-04-15 20:34:01.377][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-04-15 20:34:01.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:01.378][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:01.379][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-15 20:34:01.380][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-15 20:34:01.381][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-15 20:34:01.382][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-15 20:34:01.383][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-15 20:34:01.383][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-04-15 20:34:01.384][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:34:01.384][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:34:01.385][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-04-15 20:34:01.386][self$setPropertyValue]
biodb.DEBUG[2024-04-15 20:34:01.388][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-04-15 20:34:01.389][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-15 20:34:01.390][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-15 20:34:01.392][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-15 20:34:01.393][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-15 20:34:01.401][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:34:01.402][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-04-15 20:34:01.404][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:34:01.405][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:34:01.406][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:01.407][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:01.408][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-04-15 20:34:01.409][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-04-15 20:34:01.410][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-15 20:34:01.410][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-04-15 20:34:01.411][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-15 20:34:01.412][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-15 20:34:01.413][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-04-15 20:34:01.414][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-04-15 20:34:01.415][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-15 20:34:01.416][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:34:01.417][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:01.418][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:01.419][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.18-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-15 20:34:01.420][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-15 20:34:01.421][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-04-15 20:34:01.423][biodb::testThat]
biodb.INFO [2024-04-15 20:34:01.424][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-04-15 20:34:01.424][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-15 20:34:01.425][biodb::testThat]
biodb.DEBUG[2024-04-15 20:34:01.428][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-04-15 20:34:01.428][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-04-15 20:34:01.429][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-04-15 20:34:01.433][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:01.434][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:01.435][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:34:01.437][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:01.438][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:34:01.439][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:34:01.440][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:34:01.441][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:34:01.442][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:34:01.443][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-15 20:34:01.444][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-04-15 20:34:01.445][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-04-15 20:34:01.446][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-15 20:34:01.448][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:01.449][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-15 20:34:01.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-04-15 20:34:01.452][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-04-15 20:34:01.454][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-04-15 20:34:01.455][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-15 20:34:01.456][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-15 20:34:01.457][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-15 20:34:01.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:01.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:34:01.471][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.474][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.479][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.480][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.482][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.483][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.487][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.488][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.490][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.491][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.495][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.496][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.498][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.506][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.511][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.512][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.513][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.526][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.534][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.539][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.540][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.542][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.547][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.548][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.549][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.554][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:01.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:01.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.557][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:01.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:01.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.565][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:01.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:01.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.573][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.581][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.586][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.588][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.593][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.594][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.596][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.601][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:01.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:01.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.604][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.609][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:34:01.610][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:01.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.612][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.613][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:34:01.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:01.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.628][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.636][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:01.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.640][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.649][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.652][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:01.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:01.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:01.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:01.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:01.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:01.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:01.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.712][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.716][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.720][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:01.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:01.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:01.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:01.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:01.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.757][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:01.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:01.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.810][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.815][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:01.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:01.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.833][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:34:01.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:34:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:01.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:01.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:01.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.910][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:01.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:01.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:01.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:01.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:01.940][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-04-15 20:34:01.941][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:01.956][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:01.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:01.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:01.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:01.960][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-15 20:34:01.961][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-15 20:34:01.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:01.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:01.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:01.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:01.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:01.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:01.975][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-04-15 20:34:01.977][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-15 20:34:01.979][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:01.981][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-15 20:34:01.983][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-04-15 20:34:01.984][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-04-15 20:34:01.985][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-04-15 20:34:01.987][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-15 20:34:01.988][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-15 20:34:01.990][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-15 20:34:01.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:01.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:01.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:02.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:02.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:02.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:02.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:34:02.009][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.012][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.018][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.019][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.021][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.028][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.029][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.031][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.032][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.038][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.039][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.042][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.044][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.052][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.066][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.067][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.069][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.076][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.080][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.088][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.093][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.094][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.096][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.101][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.102][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.104][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.109][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:02.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:02.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.112][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:02.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:02.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:02.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:02.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.122][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:02.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:02.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.130][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.135][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.136][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.138][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.143][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.146][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.151][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.152][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.154][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:02.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:02.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.161][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.167][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:34:02.168][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:02.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.169][ef$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.171][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-15 20:34:02.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:02.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.195][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-15 20:34:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.202][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-15 20:34:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-15 20:34:02.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-15 20:34:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-15 20:34:02.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-15 20:34:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:02.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:02.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:02.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:02.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-15 20:34:02.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.269][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:02.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:02.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:02.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-15 20:34:02.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-15 20:34:02.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:02.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:02.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:02.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:02.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-15 20:34:02.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-15 20:34:02.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.326][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-15 20:34:02.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-15 20:34:02.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-15 20:34:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.364][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.368][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.372][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-15 20:34:02.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:02.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:02.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:02.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:02.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-15 20:34:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-15 20:34:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:34:02.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-15 20:34:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-15 20:34:02.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-15 20:34:02.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-15 20:34:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.430][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:02.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:02.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.434][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:02.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.441][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:02.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-15 20:34:02.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-15 20:34:02.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-15 20:34:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:02.467][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-04-15 20:34:02.468][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.472][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:02.484][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-15 20:34:02.485][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:34:02.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:02.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:02.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:02.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:02.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:02.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:02.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:02.500][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-04-15 20:34:02.501][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-04-15 20:34:02.502][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-04-15 20:34:02.503][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:02.505][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:02.506][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:34:02.508][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:02.509][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:34:02.510][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:34:02.511][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:34:02.512][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:34:02.513][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:34:02.514][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-15 20:34:02.515][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-15 20:34:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.520][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.535][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:02.547][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-15 20:34:02.548][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-15 20:34:02.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:02.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:02.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:02.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:02.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:02.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:02.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:34:02.558][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.574][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.581][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:02.585][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-04-15 20:34:02.586][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-15 20:34:02.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:02.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:02.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:02.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:02.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:02.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:02.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-15 20:34:02.600][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-04-15 20:34:02.601][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-04-15 20:34:02.602][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-04-15 20:34:02.604][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:02.605][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:02.606][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-15 20:34:02.608][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-15 20:34:02.608][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-15 20:34:02.610][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-15 20:34:02.611][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-15 20:34:02.612][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-15 20:34:02.612][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-15 20:34:02.613][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-15 20:34:02.614][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-15 20:34:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.620][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.628][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.635][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:02.643][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-04-15 20:34:02.643][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-04-15 20:34:02.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:02.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:02.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:02.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:02.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:02.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:02.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-15 20:34:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.824][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-15 20:34:02.838][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-15 20:34:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-15 20:34:02.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-15 20:34:02.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-15 20:34:02.842][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-15 20:34:02.843][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-15 20:34:02.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-15 20:34:02.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:02.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:02.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:02.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:02.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:02.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-04-15 20:34:02.859][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-04-15 20:34:02.860][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-04-15 20:34:02.861][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-04-15 20:34:02.862][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-04-15 20:34:02.863][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-15 20:34:02.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-15 20:34:02.864][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-15 20:34:02.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-15 20:34:02.866][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-04-15 20:34:02.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
8.928 0.447 11.929