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This page was generated on 2024-02-22 11:36:08 -0500 (Thu, 22 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4691
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4444
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4465
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1356/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MultiBaC 1.12.0  (landing page)
The package maintainer
Snapshot Date: 2024-02-21 14:05:05 -0500 (Wed, 21 Feb 2024)
git_url: https://git.bioconductor.org/packages/MultiBaC
git_branch: RELEASE_3_18
git_last_commit: 63372e3
git_last_commit_date: 2023-10-24 11:23:46 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

CHECK results for MultiBaC on nebbiolo2


To the developers/maintainers of the MultiBaC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiBaC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MultiBaC
Version: 1.12.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings MultiBaC_1.12.0.tar.gz
StartedAt: 2024-02-22 00:23:44 -0500 (Thu, 22 Feb 2024)
EndedAt: 2024-02-22 00:26:47 -0500 (Thu, 22 Feb 2024)
EllapsedTime: 183.5 seconds
RetCode: 0
Status:   OK  
CheckDir: MultiBaC.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings MultiBaC_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/MultiBaC.Rcheck’
* using R version 4.3.2 Patched (2023-11-13 r85521)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘MultiBaC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MultiBaC’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiBaC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
MultiBaC          11.014  0.220  11.233
plot_pca          10.917  0.044  10.961
inner_relPlot     10.623  0.116  10.738
plot              10.497  0.082  10.579
explained_varPlot 10.479  0.056  10.535
Q2_plot           10.188  0.164  10.353
batchCorrection   10.234  0.096  10.330
ARSyNbac           9.695  0.568  10.263
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘MultiBaC.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MultiBaC.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL MultiBaC
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘MultiBaC’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MultiBaC)

Tests output


Example timings

MultiBaC.Rcheck/MultiBaC-Ex.timings

nameusersystemelapsed
ARSyNbac 9.695 0.56810.263
MultiBaC11.014 0.22011.233
Q2_plot10.188 0.16410.353
batchCorrection10.234 0.09610.330
batchEstPlot0.7970.0200.817
createMbac0.3310.0040.336
explained_varPlot10.479 0.05610.535
genMissingOmics0.8510.0600.911
genModelList0.4130.0040.416
inner_relPlot10.623 0.11610.738
multiyeast0.0000.0020.002
plot10.497 0.08210.579
plot_pca10.917 0.04410.961
summary0.3430.0000.343