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This page was generated on 2024-04-17 11:36:51 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 933/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Harshlight 1.74.0  (landing page)
Maurizio Pellegrino
Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)
git_url: https://git.bioconductor.org/packages/Harshlight
git_branch: RELEASE_3_18
git_last_commit: c397a39
git_last_commit_date: 2023-10-24 09:37:00 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

INSTALL results for Harshlight on palomino4


To the developers/maintainers of the Harshlight package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Harshlight.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Harshlight
Version: 1.74.0
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL Harshlight
StartedAt: 2024-04-15 15:45:06 -0400 (Mon, 15 Apr 2024)
EndedAt: 2024-04-15 15:45:31 -0400 (Mon, 15 Apr 2024)
EllapsedTime: 25.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL Harshlight
###
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* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'Harshlight' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Harshlight.c -o Harshlight.o
Harshlight.c: In function 'extended_defects':
Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable]
  564 |   int num_points, *p_num_points; //number of points inside the median kernel
      |                    ^~~~~~~~~~~~
Harshlight.c: In function 'image_dilation':
Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable]
  948 |   double cell_value;
      |          ^~~~~~~~~~
Harshlight.c: In function 'norm':
Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable]
 1316 |   double *sorted; double *sorted2;
      |                           ^~~~~~~
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
 1471 |   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
      |                          ^
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
 1474 |   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
      |                          ^
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
 1532 |   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
      |                                                                                                           ^
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
 1542 |   PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
      |                          ^
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
 1543 |   PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
      |                          ^
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
 1555 |   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
      |                                                                                                           ^
gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/R/library/00LOCK-Harshlight/00new/Harshlight/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harshlight)