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This page was generated on 2024-03-29 11:36:52 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 973/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HPAStainR 1.12.0  (landing page)
Tim O. Nieuwenhuis
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/HPAStainR
git_branch: RELEASE_3_18
git_last_commit: 4c55291
git_last_commit_date: 2023-10-24 11:24:25 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for HPAStainR on palomino4


To the developers/maintainers of the HPAStainR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPAStainR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: HPAStainR
Version: 1.12.0
Command: chmod a+r HPAStainR -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HPAStainR
StartedAt: 2024-03-27 19:08:07 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 19:08:29 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 22.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r HPAStainR -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HPAStainR
###
##############################################################################
##############################################################################


* checking for file 'HPAStainR/DESCRIPTION' ... OK
* preparing 'HPAStainR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'HPAStainR.Rmd' using rmarkdown
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5615221 bytes (5.4 MB)
==================================================
downloaded 5.4 MB

trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3612666 bytes (3.4 MB)
==================================================
downloaded 3.4 MB


Quitting from lines 89-90 [normal_data_hpar] (HPAStainR.Rmd)
Error: processing vignette 'HPAStainR.Rmd' failed with diagnostics:
object 'hpaNormalTissue' not found
--- failed re-building 'HPAStainR.Rmd'

SUMMARY: processing the following file failed:
  'HPAStainR.Rmd'

Error: Vignette re-building failed.
Execution halted