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This page was generated on 2024-04-17 11:35:48 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 183/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.22.2  (landing page)
VJ Carey
Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)
git_url: https://git.bioconductor.org/packages/BiocOncoTK
git_branch: RELEASE_3_18
git_last_commit: adb7ecd
git_last_commit_date: 2024-04-04 07:48:21 -0400 (Thu, 04 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for BiocOncoTK on nebbiolo2


To the developers/maintainers of the BiocOncoTK package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocOncoTK.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BiocOncoTK
Version: 1.22.2
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
StartedAt: 2024-04-15 16:11:06 -0400 (Mon, 15 Apr 2024)
EndedAt: 2024-04-15 16:12:37 -0400 (Mon, 15 Apr 2024)
EllapsedTime: 91.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
###
##############################################################################
##############################################################################


* checking for file ‘BiocOncoTK/DESCRIPTION’ ... OK
* preparing ‘BiocOncoTK’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocOncoTK.Rmd’ using rmarkdown

Quitting from lines  at lines 693-698 [lkdar] (BiocOncoTK.Rmd)
Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics:
Timeout was reached: [hsdsdev.bioconductor.org] SSL connection timeout
--- failed re-building ‘BiocOncoTK.Rmd’

--- re-building ‘curatedMSIData.Rmd’ using rmarkdown
--- finished re-building ‘curatedMSIData.Rmd’

--- re-building ‘maptcga.Rmd’ using rmarkdown
--- finished re-building ‘maptcga.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocOncoTK.Rmd’

Error: Vignette re-building failed.
Execution halted