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This page was generated on 2023-04-12 11:05:22 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for tspair on nebbiolo2


To the developers/maintainers of the tspair package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tspair.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2106/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tspair 1.56.0  (landing page)
Jeffrey T. Leek
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/tspair
git_branch: RELEASE_3_16
git_last_commit: 4b10807
git_last_commit_date: 2022-11-01 11:04:18 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  skippedskipped

Summary

Package: tspair
Version: 1.56.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data tspair
StartedAt: 2023-04-10 18:29:43 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 18:29:47 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 4.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data tspair
###
##############################################################################
##############################################################################


* checking for file ‘tspair/DESCRIPTION’ ... OK
* preparing ‘tspair’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether ‘INDEX’ is up-to-date ... NO
* use ‘--force’ to remove the existing ‘INDEX’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘tsp.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning: Package 'tspair' is deprecated and will be removed from Bioconductor
  version 3.17

Error: processing vignette 'tsp.Rnw' failed with diagnostics:
 chunk 2 
Error in if (class(dat) == "ExpressionSet") { : 
  the condition has length > 1

--- failed re-building ‘tsp.Rnw’

SUMMARY: processing the following file failed:
  ‘tsp.Rnw’

Error: Vignette re-building failed.
Execution halted