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This page was generated on 2023-04-12 11:05:54 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for sva on palomino4


To the developers/maintainers of the sva package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sva.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1999/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sva 3.46.0  (landing page)
Jeffrey T. Leek , John D. Storey
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/sva
git_branch: RELEASE_3_16
git_last_commit: 4aac49c
git_last_commit_date: 2022-11-01 11:06:24 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: sva
Version: 3.46.0
Command: rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=sva.buildbin-libdir sva_3.46.0.tar.gz
StartedAt: 2023-04-11 08:52:41 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 08:53:09 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 27.7 seconds
RetCode: 0
Status:   OK  
PackageFile: sva_3.46.0.zip
PackageFileSize: 571.1 KiB

Command output

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###
### Running command:
###
###   rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=sva.buildbin-libdir sva_3.46.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'sva' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sva.c -o sva.o
sva.c:27:34: warning: missing braces around initializer [-Wmissing-braces]
   27 | R_CallMethodDef callMethods[]  = {
      |                                  ^
gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/sva.buildbin-libdir/00LOCK-sva/00new/sva/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'sva' as sva_3.46.0.zip
* DONE (sva)