Nils Hoffmann
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/rgoslin |
| git_branch: RELEASE_3_16 |
| git_last_commit: 6d51b88 |
| git_last_commit_date: 2022-11-01 11:26:37 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:48 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the rgoslin package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rgoslin.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1664/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rgoslin 1.2.0 (landing page) Nils Hoffmann
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: rgoslin |
| Version: 1.2.0 |
| Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL rgoslin |
| StartedAt: 2023-04-10 15:35:32 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 15:38:52 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 200.4 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL rgoslin ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'rgoslin' ... ** using staged installation ** libs The name of the shared library to be created is: rgoslin.dll make[1]: Entering directory '/f/biocbuild/bbs-3.16-bioc/meat/rgoslin/src/cppgoslin' rm -f "cppgoslin/parser/KnownGrammars.h" rm -f "src/domain/LipidClasses.cpp" rm -f "cppgoslin/domain/ClassesEnum.h" rm -f cppgoslin/domain/*.o rm -f cppgoslin/parser/*.o rm -f cppgoslin/tests/*.o rm -f libcppGoslin.so rm -f *Test rm -f writeGrammarsHeader rm -f writeLipidEnums rm -f libcppGoslin.a make[1]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/meat/rgoslin/src/cppgoslin' make[1]: Entering directory '/f/biocbuild/bbs-3.16-bioc/meat/rgoslin/src/cppgoslin' g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I . -o writeGrammarsHeader writeGrammarsHeader.cpp && ./writeGrammarsHeader "cppgoslin/parser/KnownGrammars.h" g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I . -o writeLipidEnums writeLipidEnums.cpp src/domain/StringFunctions.cpp src/parser/SumFormulaParserEventHandler.cpp src/parser/ParserClasses.cpp && ./writeLipidEnums "src/domain/LipidClasses.cpp" g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Adduct.o -c src/domain/Adduct.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidMolecularSpecies.o -c src/domain/LipidMolecularSpecies.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSnPosition.o -c src/domain/LipidSnPosition.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidStructureDefined.o -c src/domain/LipidStructureDefined.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/FattyAcid.o -c src/domain/FattyAcid.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidAdduct.o -c src/domain/LipidAdduct.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSpecies.o -c src/domain/LipidSpecies.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidFullStructure.o -c src/domain/LipidFullStructure.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidCompleteStructure.o -c src/domain/LipidCompleteStructure.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSpeciesInfo.o -c src/domain/LipidSpeciesInfo.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/StringFunctions.o -c src/domain/StringFunctions.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidClasses.o -c src/domain/LipidClasses.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/DoubleBonds.o -c src/domain/DoubleBonds.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/FunctionalGroup.o -c src/domain/FunctionalGroup.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Headgroup.o -c src/domain/Headgroup.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Cycle.o -c src/domain/Cycle.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/GenericDatastructures.o -c src/domain/GenericDatastructures.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/ParserClasses.o -c src/parser/ParserClasses.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/KnownParsers.o -c src/parser/KnownParsers.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/GoslinParserEventHandler.o -c src/parser/GoslinParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/LipidMapsParserEventHandler.o -c src/parser/LipidMapsParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SwissLipidsParserEventHandler.o -c src/parser/SwissLipidsParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/HmdbParserEventHandler.o -c src/parser/HmdbParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SumFormulaParserEventHandler.o -c src/parser/SumFormulaParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SumFormulaParser.o -c src/parser/SumFormulaParser.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/ShorthandParserEventHandler.o -c src/parser/ShorthandParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/FattyAcidParserEventHandler.o -c src/parser/FattyAcidParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/LipidBaseParserEventHandler.o -c src/parser/LipidBaseParserEventHandler.cpp ar rcs libcppGoslin.a src/domain/Adduct.o src/domain/LipidMolecularSpecies.o src/domain/LipidSnPosition.o src/domain/LipidStructureDefined.o src/domain/FattyAcid.o src/domain/LipidAdduct.o src/domain/LipidSpecies.o src/domain/LipidFullStructure.o src/domain/LipidCompleteStructure.o src/domain/LipidSpeciesInfo.o src/domain/StringFunctions.o src/domain/LipidClasses.o src/domain/DoubleBonds.o src/domain/FunctionalGroup.o src/domain/Headgroup.o src/domain/Cycle.o src/domain/GenericDatastructures.o src/parser/ParserClasses.o src/parser/KnownParsers.o src/parser/GoslinParserEventHandler.o src/parser/LipidMapsParserEventHandler.o src/parser/SwissLipidsParserEventHandler.o src/parser/HmdbParserEventHandler.o src/parser/SumFormulaParserEventHandler.o src/parser/SumFormulaParser.o src/parser/ShorthandParserEventHandler.o src/parser/FattyAcidParserEventHandler.o src/parser/LipidBaseParserEventHandler.o make[1]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/meat/rgoslin/src/cppgoslin' g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rgoslin.cpp -o rgoslin.o g++ -shared -s -static-libgcc -o rgoslin.dll tmp.def RcppExports.o rgoslin.o cppgoslin/libcppGoslin.a -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-rgoslin/00new/rgoslin/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgoslin)