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This page was generated on 2023-04-12 11:05:09 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for maSigPro on nebbiolo2


To the developers/maintainers of the maSigPro package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1097/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.70.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: RELEASE_3_16
git_last_commit: 9dbfdfe
git_last_commit_date: 2022-11-01 10:40:03 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: maSigPro
Version: 1.70.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings maSigPro_1.70.0.tar.gz
StartedAt: 2023-04-10 21:42:23 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 21:44:36 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 133.6 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings maSigPro_1.70.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/maSigPro.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.70.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
ISOdata       10.324  0.192  10.516
IsoPlot       10.216  0.004  10.220
tableDS       10.183  0.004  10.187
getDSPatterns 10.155  0.012  10.167
ISOdesign     10.132  0.024  10.156
IsoModel      10.144  0.004  10.149
seeDS         10.029  0.012  10.040
PodiumChange   9.987  0.008   9.995
getDS          9.864  0.008   9.872
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘maSigPro.Rnw’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL maSigPro
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata10.324 0.19210.516
ISOdesign10.132 0.02410.156
IsoModel10.144 0.00410.149
IsoPlot10.216 0.00410.220
NBdata0.0010.0000.001
NBdesign0.0000.0000.001
PlotGroups0.0240.0000.024
PlotProfiles0.0000.0040.003
PodiumChange9.9870.0089.995
T.fit4.6990.0004.700
average.rows0.0020.0000.002
data.abiotic0.0040.0000.004
edesign.abiotic0.0020.0000.002
edesignCT0.0010.0000.001
edesignDR0.0010.0000.001
get.siggenes2.2110.0002.211
getDS9.8640.0089.872
getDSPatterns10.155 0.01210.167
i.rank000
maSigProUsersGuide0.0020.0000.004
make.design.matrix0.0050.0000.005
p.vector1.3550.0001.355
position000
reg.coeffs000
see.genes0.4880.0000.487
seeDS10.029 0.01210.040
stepback0.020.000.02
stepfor0.0770.0000.078
suma2Venn0.0130.0040.018
tableDS10.183 0.00410.187
two.ways.stepback0.0630.0000.063
two.ways.stepfor0.0880.0000.088