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This page was generated on 2023-04-12 11:05:36 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for hapFabia on palomino4


To the developers/maintainers of the hapFabia package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hapFabia.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 888/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hapFabia 1.40.0  (landing page)
Andreas Mitterecker
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/hapFabia
git_branch: RELEASE_3_16
git_last_commit: 4ccfc31
git_last_commit_date: 2022-11-01 11:07:20 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: hapFabia
Version: 1.40.0
Command: rm -rf hapFabia.buildbin-libdir && mkdir hapFabia.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=hapFabia.buildbin-libdir hapFabia_1.40.0.tar.gz
StartedAt: 2023-04-11 08:07:25 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 08:08:00 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 35.0 seconds
RetCode: 0
Status:   OK  
PackageFile: hapFabia_1.40.0.zip
PackageFileSize: 1.715 MiB

Command output

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###
### Running command:
###
###   rm -rf hapFabia.buildbin-libdir && mkdir hapFabia.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=hapFabia.buildbin-libdir hapFabia_1.40.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'hapFabia' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c interfaceR.c -o interfaceR.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c split_sparse_matrixB.c -o split_sparse_matrixB.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c vcftoFABIAB.c -o vcftoFABIAB.o
vcftoFABIAB.c: In function 'getdelimS':
vcftoFABIAB.c:50:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   50 |       if (ch == EOF)
      |       ^~
vcftoFABIAB.c:54:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   54 |          while (idx > *linebufsz - 2) {
      |          ^~~~~
vcftoFABIAB.c: In function 'vcftoFABIAB':
vcftoFABIAB.c:394:5: warning: 'strncat' output may be truncated copying 19 bytes from a string of length 1999 [-Wstringop-truncation]
  394 |     strncat(format[j],Iformat,19);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vcftoFABIAB.c:382:5: warning: 'strncat' output may be truncated copying 190 bytes from a string of length 19999 [-Wstringop-truncation]
  382 |     strncat(info[j],Iinfo,190);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
vcftoFABIAB.c:372:5: warning: 'strncat' output may be truncated copying 19 bytes from a string of length 1999 [-Wstringop-truncation]
  372 |     strncat(filter[j],Ifilter,19);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vcftoFABIAB.c:362:5: warning: 'strncat' output may be truncated copying 19 bytes from a string of length 1999 [-Wstringop-truncation]
  362 |     strncat(qual[j],Iqual,19);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
vcftoFABIAB.c:352:5: warning: 'strncat' output may be truncated copying 190 bytes from a string of length 1999999 [-Wstringop-truncation]
  352 |     strncat(minor[j],Iminor,190);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vcftoFABIAB.c:342:5: warning: 'strncat' output may be truncated copying 190 bytes from a string of length 1999999 [-Wstringop-truncation]
  342 |     strncat(major[j],Imajor,190);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vcftoFABIAB.c:332:5: warning: 'strncat' output may be truncated copying 49 bytes from a string of length 4999 [-Wstringop-truncation]
  332 |     strncat(snpName[j],IsnpName,49);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o hapFabia.dll tmp.def interfaceR.o split_sparse_matrixB.o vcftoFABIAB.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/hapFabia.buildbin-libdir/00LOCK-hapFabia/00new/hapFabia/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'hapFabia' as hapFabia_1.40.0.zip
* DONE (hapFabia)