Back to Multiple platform build/check report for BioC 3.16:   simplified   long
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-03-17 11:06:37 -0400 (Fri, 17 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4516
palomino4Windows Server 2022 Datacenterx644.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" 4295
lconwaymacOS 12.5.1 Montereyx86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4324
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for globaltest on lconway


To the developers/maintainers of the globaltest package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/globaltest.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 829/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
globaltest 5.52.0  (landing page)
Jelle Goeman
Snapshot Date: 2023-03-15 14:00:04 -0400 (Wed, 15 Mar 2023)
git_url: https://git.bioconductor.org/packages/globaltest
git_branch: RELEASE_3_16
git_last_commit: a1fc3ad
git_last_commit_date: 2022-11-01 10:37:40 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  skippedskipped

Summary

Package: globaltest
Version: 5.52.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data globaltest
StartedAt: 2023-03-15 16:43:41 -0400 (Wed, 15 Mar 2023)
EndedAt: 2023-03-15 16:44:18 -0400 (Wed, 15 Mar 2023)
EllapsedTime: 37.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data globaltest
###
##############################################################################
##############################################################################


* checking for file ‘globaltest/DESCRIPTION’ ... OK
* preparing ‘globaltest’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GlobalTest.Rnw’ using Sweave
Loading required package: survival
Loading required namespace: Rgraphviz
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following object is masked from ‘package:globaltest’:

    sort

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: hu6800.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: org.Hs.eg.db



Error: processing vignette 'GlobalTest.Rnw' failed with diagnostics:
 chunk 74 (label = gtKEGG) 
Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE,  : 
  row names contain missing values

--- failed re-building ‘GlobalTest.Rnw’

SUMMARY: processing the following file failed:
  ‘GlobalTest.Rnw’

Error: Vignette re-building failed.
Execution halted