Altuna Akalin
| Snapshot Date: 2023-03-24 14:00:04 -0400 (Fri, 24 Mar 2023) |
| git_url: https://git.bioconductor.org/packages/genomation |
| git_branch: RELEASE_3_16 |
| git_last_commit: 99239c1 |
| git_last_commit_date: 2022-11-01 11:10:49 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-03-27 11:04:59 -0400 (Mon, 27 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4480 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4276 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4304 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the genomation package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genomation.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 777/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| genomation 1.30.0 (landing page) Altuna Akalin
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: genomation |
| Version: 1.30.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data genomation |
| StartedAt: 2023-03-24 16:39:54 -0400 (Fri, 24 Mar 2023) |
| EndedAt: 2023-03-24 16:41:03 -0400 (Fri, 24 Mar 2023) |
| EllapsedTime: 68.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data genomation
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* checking for file ‘genomation/DESCRIPTION’ ... OK
* preparing ‘genomation’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GenomationManual.Rmd’ using rmarkdown
Could not fetch https://raw.githubusercontent.com/BIMSBbioinfo/genomation/master/vignettes/Figures/genomationFlowChart1.png
HttpExceptionRequest Request {
host = "raw.githubusercontent.com"
port = 443
secure = True
requestHeaders = []
path = "/BIMSBbioinfo/genomation/master/vignettes/Figures/genomationFlowChart1.png"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
}
(InternalException (HandshakeFailed (Error_Protocol ("certificate has expired",True,CertificateExpired))))
Error: processing vignette 'GenomationManual.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘GenomationManual.Rmd’
SUMMARY: processing the following file failed:
‘GenomationManual.Rmd’
Error: Vignette re-building failed.
Execution halted