##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf flowWorkspace.buildbin-libdir && mkdir flowWorkspace.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=flowWorkspace.buildbin-libdir flowWorkspace_4.10.1.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'flowWorkspace' ...
** using staged installation
** libs
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_API.cpp -o R_API.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from R_API.cpp:9:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from R_API.cpp:9:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from R_GatingHierarchy.cpp:18:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from R_GatingHierarchy.cpp:18:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_GatingSet.cpp -o R_GatingSet.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrameView.hpp:12,
from flowWorkspace_types.h:7,
from R_GatingSet.cpp:10:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrameView.hpp:12,
from flowWorkspace_types.h:7,
from R_GatingSet.cpp:10:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp11.cpp -o cpp11.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrameView.hpp:12,
from flowWorkspace_types.h:7,
from cpp11.cpp:4:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrameView.hpp:12,
from flowWorkspace_types.h:7,
from cpp11.cpp:4:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11.hpp:10,
from F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11/declarations.hpp:8,
from flowWorkspace_types.h:5,
from cpp11.cpp:4:
F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11/external_pointer.hpp: In instantiation of 'void cpp11::default_deleter(T*) [with T = cytolib::CytoFrameView]':
cpp11.cpp:9:56: required from here
F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11/external_pointer.hpp:17:3: warning: deleting object of polymorphic class type 'cytolib::CytoFrameView' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
17 | delete obj;
| ^~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cytoframeAPI.cpp -o cytoframeAPI.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
from cytoframeAPI.cpp:3:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
from cytoframeAPI.cpp:3:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from cytoframeAPI.cpp:8:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h: In function 'cpp11::writable::doubles_matrix<> arma_to_rmatrix(const mat&)':
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:33:21: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
33 | for (auto j = 0; j < m; j++) {
| ~~^~~
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:34:22: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
34 | for (auto i = 0; i < n; i++) {
| ~~^~~
cytoframeAPI.cpp: In function 'cpp11::writable::doubles_matrix<> cf_getData(cpp11::external_pointer<cytolib::CytoFrameView>)':
cytoframeAPI.cpp:223:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
223 | for(int i = 0; i < ncol; i++)
| ~~^~~~~~
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11.hpp:10,
from cytoframeAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11/external_pointer.hpp: In instantiation of 'void cpp11::default_deleter(T*) [with T = cytolib::CytoFrameView]':
cytoframeAPI.cpp:12:76: required from here
F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11/external_pointer.hpp:17:3: warning: deleting object of polymorphic class type 'cytolib::CytoFrameView' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
17 | delete obj;
| ^~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cytosetAPI.cpp -o cytosetAPI.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
from cytosetAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
from cytosetAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from cytosetAPI.cpp:2:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h: In function 'cpp11::writable::doubles_matrix<> arma_to_rmatrix(const mat&)':
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:33:21: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
33 | for (auto j = 0; j < m; j++) {
| ~~^~~
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:34:22: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
34 | for (auto i = 0; i < n; i++) {
| ~~^~~
cytosetAPI.cpp: In function 'cpp11::external_pointer<cytolib::GatingSet> fcs_to_cytoset(cpp11::strings, cpp11::list, std::string, std::string)':
cytosetAPI.cpp:71:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'long long int' [-Wsign-compare]
71 | for (size_t i = 0; i < n; i++)
| ~~^~~
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11.hpp:10,
from ../inst/include/flowWorkspace/pairVectorCpp11Convert.h:10,
from cytosetAPI.cpp:2:
F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11/external_pointer.hpp: In instantiation of 'void cpp11::default_deleter(T*) [with T = cytolib::CytoFrameView]':
cytosetAPI.cpp:32:107: required from here
F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include/cpp11/external_pointer.hpp:17:3: warning: deleting object of polymorphic class type 'cytolib::CytoFrameView' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
17 | delete obj;
| ^~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getDescendants.cpp -o getDescendants.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from getDescendants.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from getDescendants.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getPopStats.cpp -o getPopStats.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from getPopStats.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from getPopStats.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
getPopStats.cpp: In function 'cpp11::list getPopCounts_cpp(cpp11::external_pointer<cytolib::GatingSet>, bool, cytolib::StringVec, bool, bool)':
getPopStats.cpp:37:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
37 | for(int i = 0; i < nSample; i++)
| ~~^~~~~~~~~
getPopStats.cpp:48:26: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
48 | for(int j = 0; j < nPop; j++){
| ~~^~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getSingleCellExpression.cpp -o getSingleCellExpression.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from getSingleCellExpression.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from getSingleCellExpression.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c h5_error_r_handler.cpp -o h5_error_r_handler.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from ../inst/include/flowWorkspace/pairVectorCpp11Convert.h:12,
from h5_error_r_handler.cpp:8:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from ../inst/include/flowWorkspace/pairVectorCpp11Convert.h:12,
from h5_error_r_handler.cpp:8:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from h5_error_r_handler.cpp:8:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h: In function 'cpp11::writable::doubles_matrix<> arma_to_rmatrix(const mat&)':
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:33:21: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
33 | for (auto j = 0; j < m; j++) {
| ~~^~~
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:34:22: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
34 | for (auto i = 0; i < n; i++) {
| ~~^~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c setCounts.cpp -o setCounts.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from setCounts.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
from setCounts.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
mkdir -p "F:/biocbuild/bbs-3.16-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/x64"
ar rs "F:/biocbuild/bbs-3.16-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/x64/libflowWorkspace.a" R_API.o R_GatingHierarchy.o R_GatingSet.o cpp11.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: creating F:/biocbuild/bbs-3.16-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/x64/libflowWorkspace.a
g++ -shared -s -static-libgcc -o flowWorkspace.dll tmp.def R_API.o R_GatingHierarchy.o R_GatingSet.o cpp11.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/lib/x64/libcytolib.a F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/lib/x64/GatingSet.pb.o -LF:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/lib/x64 -lprotobuf -LF:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LF:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5_cpp -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -lws2_32 -lbcrypt -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'flowWorkspace' as flowWorkspace_4.10.1.zip
* DONE (flowWorkspace)
