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This page was generated on 2023-04-12 11:06:29 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for TFBSTools on lconway


To the developers/maintainers of the TFBSTools package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFBSTools.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2039/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TFBSTools 1.36.0  (landing page)
Ge Tan
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/TFBSTools
git_branch: RELEASE_3_16
git_last_commit: 3358c89
git_last_commit_date: 2022-11-01 11:08:54 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: TFBSTools
Version: 1.36.0
Command: rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TFBSTools_1.36.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R TFBSTools.buildbin-libdir
StartedAt: 2023-04-11 00:08:35 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 00:09:37 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 61.7 seconds
RetCode: 0
Status:   OK  
PackageFile: TFBSTools_1.36.0.tgz
PackageFileSize: 1.647 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TFBSTools_1.36.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R TFBSTools.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TFBSTools.buildbin-libdir TFBSTools_1.36.0.tar.gz'
>>>>>>> 

* installing *source* package ‘TFBSTools’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
matrixAlignerDynamic.c:63:9: warning: variable 'sum_i' set but not used [-Wunused-but-set-variable]
  float sum_i; // counter for sums in a position in profile1
        ^
matrixAlignerDynamic.c:64:9: warning: variable 'sum_j' set but not used [-Wunused-but-set-variable]
  float sum_j; // counter for sums in a position in profile2
        ^
2 warnings generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_TFBSTools.c -o R_init_TFBSTools.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TFBSTools.so matrixAlignerDynamic.o R_init_TFBSTools.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/TFBSTools.buildbin-libdir/00LOCK-TFBSTools/00new/TFBSTools/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘seqLogo’ in package ‘TFBSTools’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFBSTools)


>>>>>>> 
>>>>>>> FIXING LINKS FOR TFBSTools.buildbin-libdir/TFBSTools/libs/TFBSTools.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "TFBSTools.buildbin-libdir/TFBSTools/libs/TFBSTools.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "TFBSTools.buildbin-libdir/TFBSTools/libs/TFBSTools.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "TFBSTools.buildbin-libdir/TFBSTools/libs/TFBSTools.so"