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This page was generated on 2023-04-12 11:05:54 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for SPONGE on palomino4


To the developers/maintainers of the SPONGE package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPONGE.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1951/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SPONGE 1.20.0  (landing page)
Markus List
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/SPONGE
git_branch: RELEASE_3_16
git_last_commit: 65329b9
git_last_commit_date: 2022-11-01 11:16:13 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: SPONGE
Version: 1.20.0
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL SPONGE
StartedAt: 2023-04-10 16:48:26 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 16:49:55 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 88.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL SPONGE
###
##############################################################################
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* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'SPONGE' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
Note: next used in wrong context: no loop is visible 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** testing if installed package keeps a record of temporary installation path
* DONE (SPONGE)