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This page was generated on 2023-04-12 11:05:53 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for SNPRelate on palomino4


To the developers/maintainers of the SNPRelate package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1911/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPRelate 1.32.2  (landing page)
Xiuwen Zheng
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/SNPRelate
git_branch: RELEASE_3_16
git_last_commit: c9bfefd
git_last_commit_date: 2023-01-19 11:18:42 -0400 (Thu, 19 Jan 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SNPRelate
Version: 1.32.2
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL SNPRelate
StartedAt: 2023-04-10 15:34:48 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 15:35:42 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 54.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL SNPRelate
###
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* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'SNPRelate' ...
** using staged installation
** libs
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ConvToGDS.cpp -o ConvToGDS.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c R_SNPRelate.c -o R_SNPRelate.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SNPRelate.cpp -o SNPRelate.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ThreadPool.cpp -o ThreadPool.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dGenGWAS.cpp -o dGenGWAS.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dVect.cpp -o dVect.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genBeta.cpp -o genBeta.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genEIGMIX.cpp -o genEIGMIX.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genFst.cpp -o genFst.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genHWE.cpp -o genHWE.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genIBD.cpp -o genIBD.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genIBS.cpp -o genIBS.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genKING.cpp -o genKING.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genLD.cpp -o genLD.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genPCA.cpp -o genPCA.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.16-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genSlideWin.cpp -o genSlideWin.o
g++ -std=gnu++14 -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-SNPRelate/00new/SNPRelate/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SNPRelate)