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This page was generated on 2023-04-12 11:06:24 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for SANTA on lconway


To the developers/maintainers of the SANTA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SANTA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1766/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SANTA 2.34.0  (landing page)
Alex Cornish
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/SANTA
git_branch: RELEASE_3_16
git_last_commit: 827739a
git_last_commit_date: 2022-11-01 11:23:59 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SANTA
Version: 2.34.0
Command: rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SANTA_2.34.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R SANTA.buildbin-libdir
StartedAt: 2023-04-11 00:02:53 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 00:03:06 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 12.5 seconds
RetCode: 0
Status:   OK  
PackageFile: SANTA_2.34.0.tgz
PackageFileSize: 4.132 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SANTA_2.34.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R SANTA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SANTA.buildbin-libdir SANTA_2.34.0.tar.gz'
>>>>>>> 

* installing *source* package ‘SANTA’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c computenetK_fewzeros.c -o computenetK_fewzeros.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c computenodeAUK.c -o computenodeAUK.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c computeweights.c -o computeweights.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SANTA.so computenetK_fewzeros.o computenodeAUK.o computeweights.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/SANTA.buildbin-libdir/00LOCK-SANTA/00new/SANTA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SANTA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SANTA.buildbin-libdir/SANTA/libs/SANTA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "SANTA.buildbin-libdir/SANTA/libs/SANTA.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "SANTA.buildbin-libdir/SANTA/libs/SANTA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "SANTA.buildbin-libdir/SANTA/libs/SANTA.so"