Pengfan Zhang
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/Rbec |
| git_branch: RELEASE_3_16 |
| git_last_commit: 652172f |
| git_last_commit_date: 2022-11-01 11:24:46 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:47 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Rbec package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rbec.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1599/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rbec 1.6.0 (landing page) Pengfan Zhang
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Rbec |
| Version: 1.6.0 |
| Command: rm -rf Rbec.buildbin-libdir && mkdir Rbec.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=Rbec.buildbin-libdir Rbec_1.6.0.tar.gz |
| StartedAt: 2023-04-11 08:35:06 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:35:55 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 49.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Rbec_1.6.0.zip |
| PackageFileSize: 1.844 MiB |
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### Running command:
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### rm -rf Rbec.buildbin-libdir && mkdir Rbec.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=Rbec.buildbin-libdir Rbec_1.6.0.tar.gz
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* installing *source* package 'Rbec' ...
** using staged installation
** libs
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from ../inst/include/Rbec.h:7,
from RcppExports.cpp:4:
../inst/include/Rbec_RcppExports.h:14:14: warning: 'void Rbec::{anonymous}::validateSignature(const char*)' defined but not used [-Wunused-function]
14 | void validateSignature(const char* sig) {
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmer_dist.cpp -o kmer_dist.o
kmer_dist.cpp: In function 'Rcpp::NumericVector kmer_dist(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, int)':
kmer_dist.cpp:33:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare]
33 | for(int i=0;i<nseqs;i++) {
| ~^~~~~~
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_test.cpp -o rcpp_test.o
rcpp_test.cpp: In function 'void assign_kmer(uint16_t*, const char*, int)':
rcpp_test.cpp:71:8: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare]
71 | if(k >= len || k < 3 || k > 8) { Rcpp::stop("Invalid kmer-size."); }
| ~~^~~~~~
rcpp_test.cpp:81:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare]
81 | for(i=0; i<klen; i++) {
| ~^~~~~
g++ -std=gnu++14 -shared -s -static-libgcc -o Rbec.dll tmp.def RcppExports.o kmer_dist.o rcpp_test.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/Rbec.buildbin-libdir/00LOCK-Rbec/00new/Rbec/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Rbec' as Rbec_1.6.0.zip
* DONE (Rbec)